Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc181250g00018 | ATGATTCAAGTGGAACCTGGTGTAGTTGGGGTTATGGATAGTGCAAATGAAGCATCATCATCTTTGAGCTTTGTATCATCTCATTTATCAAATGGTGGTTCAAGCAACAACAATGACCATGGTGGTGGTGGTGGTGGTGGGGGTATTGAGATTTTGAGCTTGAAGAAGCTAAGCACTAGCCTTGAGAAACTCTTGATTGATGCTGAATATGATTATAGTGATGCTGAGATTCTTGTTGAAGGTGTCCCTGTGAGTGTTCATAGGTGTGTATTGGCTTCAAGAAGTCCATTCTTTCATGAACTTTTCAAGAAAGGGAGTAATGTTAACAATGGCGAGGGTTCGGTTAAGGAAGGAGGAAAACCAAGGTATCTCATGTCTGAATTGGTGCCTTATGGGAGAGTTGGCTATGAATCCTTCCTTGTTTTCTTGCATTATTTATATACAGGGAACCTTAAGGCTTCACCACCAGAAGTAACAACTTGTGTTGATGAAACATGTGTCCACAATGCGTGCCGGCCCGCGATCGATTATGCTTTGGAGCTCATGTATGCCTCTGCCACTTTCCAGATGAAAGAACTTGTTTTGCTTTTTCAGCGGCGCCTTCTAAACTTTGTTGAGAAAGCTGTAGTGGAAGATGTGATTCCTATTCTTATGGCAGCCTTCCACTGTCAACTAAGCCAGCTTAGGTCTCAATGCACTCAAAGAGTAGCAAGGTCTTACCTTGACACAACATCTTTGGAAAAGGAGTTTCCTCAAGAAATTGTGGACGAAATCAAATCGCTCCGAGCACTATCTGTGCCGGAATCCACACCTGCTGAAATGGAAGTGGAGACTTTGAATGATAAGAGTATCAGAAGAATCCATAAGGCAATGGATTCAGATGATGTTGAGCTACTTAAGCTTCTTTTGAACGAGTCGAAGGTCACTCTAGATGATGCTTATGCACTTCACTATGCTTGTGCCTATAGTGATTCTAAGCTTATTCAAGAGGTTCTTAATCTAGGCTTGGCTGATATTAACCTTAGAAATCCCCGAGGATACACGGTTCTTCATGTCGCGGCAAGGCGAAAGGATCCTTCAATTTTGGTAGCATTGCTGAAGAAGGGGGCTAATGCATCAGATACTACTCCTGATGGACAAACAGCCCTTGTGATTTGTCAGAGGTTGACACGGCGAAAGGATTATCATGAGCAAACTGTTCAGGGGAAGGAATCTAACAAGGACAGGCTCTGCATCGATGTCCTCGAGCGAGAAATGAGGAGGAATTTCATGTCTGTGAACATGTCTGATTCATCTGAGACAACTGCTGAGGATTTGCATATGAAGCTGGATTACCTTGAAAATCGAGTTGCATTTGCTAGGCTGTTGTTCCCTGCTGAGGCTAGAGTTGCCATTGAGAATGCCGAGGCGGATTCAGCCTCGTTGGATACAACATTGTCAGCTTTGAAGCGTGCAGGTGGTAATCGCGAAGTAGACCTGAATGAAACTCCGGCTGTTCGAACCAAAAAGATGCAGCTAAGATTGCAATCCCTTCAAAAAACAGTTGAGAATGGTAGGCGCTTCTTCCCACATTGCTCCGAGGTGCTCGACAACTTCTTGGAGGATCTCATACCGGACGTTTTCTTCCTCGATAAGGGCTCGGAAGAAGAGCAGCGAATCAAGAAAGTTCGATTCATGGAACTCAAAGACGACGTCCAGAGGGCGTTTGACATGGATATGGCCCAAAGCAAACGCCATTCTGGCTTGTCATCGTCGGTGTCTTCCTCTTCCTCGTCGTCTCGGAAGGAAGGAGTTGGCCATAGAGTGAGGAAGAAGTGA | 1818 | 0.4472 | MIQVEPGVVGVMDSANEASSSLSFVSSHLSNGGSSNNNDHGGGGGGGGIEILSLKKLSTSLEKLLIDAEYDYSDAEILVEGVPVSVHRCVLASRSPFFHELFKKGSNVNNGEGSVKEGGKPRYLMSELVPYGRVGYESFLVFLHYLYTGNLKASPPEVTTCVDETCVHNACRPAIDYALELMYASATFQMKELVLLFQRRLLNFVEKAVVEDVIPILMAAFHCQLSQLRSQCTQRVARSYLDTTSLEKEFPQEIVDEIKSLRALSVPESTPAEMEVETLNDKSIRRIHKAMDSDDVELLKLLLNESKVTLDDAYALHYACAYSDSKLIQEVLNLGLADINLRNPRGYTVLHVAARRKDPSILVALLKKGANASDTTPDGQTALVICQRLTRRKDYHEQTVQGKESNKDRLCIDVLEREMRRNFMSVNMSDSSETTAEDLHMKLDYLENRVAFARLLFPAEARVAIENAEADSASLDTTLSALKRAGGNREVDLNETPAVRTKKMQLRLQSLQKTVENGRRFFPHCSEVLDNFLEDLIPDVFFLDKGSEEEQRIKKVRFMELKDDVQRAFDMDMAQSKRHSGLSSSVSSSSSSSRKEGVGHRVRKK | 605 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc181250g00018 | 605 | Gene3D | - | 246 | 484 | IPR036770 | - | |
| Stsc181250g00018 | 605 | ProSiteProfiles | BTB domain profile. | 73 | 155 | IPR000210 | GO:0005515 | |
| Stsc181250g00018 | 605 | Pfam | Ankyrin repeats (many copies) | 333 | 383 | IPR002110 | GO:0005515 | |
| Stsc181250g00018 | 605 | ProSiteProfiles | Ankyrin repeat region circular profile. | 345 | 373 | - | - | |
| Stsc181250g00018 | 605 | Pfam | NPR1/NIM1 like defence protein C terminal | 387 | 589 | IPR021094 | - | |
| Stsc181250g00018 | 605 | FunFam | Regulatory protein NPR3 | 47 | 237 | - | - | |
| Stsc181250g00018 | 605 | Pfam | BTB/POZ domain | 70 | 159 | IPR000210 | GO:0005515 | |
| Stsc181250g00018 | 605 | CDD | BTB_POZ_NPR_plant | 55 | 205 | - | - | |
| Stsc181250g00018 | 605 | SUPERFAMILY | Ankyrin repeat | 276 | 388 | IPR036770 | - | |
| Stsc181250g00018 | 605 | Coils | Coil | 465 | 485 | - | - | |
| Stsc181250g00018 | 605 | MobiDBLite | consensus disorder prediction | 577 | 595 | - | - | |
| Stsc181250g00018 | 605 | SUPERFAMILY | POZ domain | 70 | 203 | IPR011333 | - | |
| Stsc181250g00018 | 605 | SMART | ANK_2a | 282 | 310 | IPR002110 | GO:0005515 | |
| Stsc181250g00018 | 605 | SMART | ANK_2a | 345 | 374 | IPR002110 | GO:0005515 | |
| Stsc181250g00018 | 605 | SMART | ANK_2a | 311 | 341 | IPR002110 | GO:0005515 | |
| Stsc181250g00018 | 605 | FunFam | BTB/POZ domain and ankyrin repeat-containing protein NPR1 | 248 | 409 | - | - | |
| Stsc181250g00018 | 605 | MobiDBLite | consensus disorder prediction | 569 | 605 | - | - | |
| Stsc181250g00018 | 605 | PANTHER | REGULATORY PROTEIN NPR3 | 26 | 596 | IPR044292 | GO:0009862|GO:2000022|GO:2000031 | |
| Stsc181250g00018 | 605 | ProSiteProfiles | Ankyrin repeat profile. | 345 | 377 | IPR002110 | GO:0005515 | |
| Stsc181250g00018 | 605 | Pfam | Domain of unknown function (DUF3420) | 241 | 288 | IPR024228 | - | |
| Stsc181250g00018 | 605 | Gene3D | Potassium Channel Kv1.1; Chain A | 52 | 237 | IPR011333 | - | |
| Stsc181250g00018 | 605 | SMART | BTB_4 | 73 | 205 | IPR000210 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc181250g00018 | Stsc-Chr181250 | 127144 | 130290 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | TRAF | Stsc181250g00018 | NPR1_like_C | 5.2e-76 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc181250g00018 | K14508 | - | gmx:100814739 | 820.846 |