Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181250g00012 ATGGATATGGCTAAGTTGTACATGAATAACGAGTACTCTGAAGAACATGAACAAGAAGATGATGAGATGATGAAAGAGGAAGAGAAAGAGAAAGAAGAAGAAGAAGAAGTTGTGCTTCCTGGGTTTAGATTCCACCCTACAGATGAAGAGCTTGTTGGGTTTTATCTGAGGAGGAAGGTTGAGAAGAAGCCTCTTAAGATTGAACTTATCAAACATGTTGATATCTACAAATATGATCCATGGGATCTTCCAAAAGTTAGCACATCAATGGGGGAGAAAGAATGGTATTTCTTTTGCATAAGAGGGAGAAAGTACAGAAACAGCATAAGGCCAAATAGGGTTACAGGATCAGGGTTTTGGAAAGCCACAGGGATTGATAAACCTATATACAGTGTTAATTATAAATATAATAATAATAATCATAATAGTAAGAAGAAGGAAGAAGATCAGGGTGATCATCATGAATGCATTGGACTGAAGAAATCTTTGGTTTATTACCGTGGAAGTGCTGGAAAAGGCACTAAAACTGATTGGATGATGCATGAGTTTCGTCTCCCATCCAATAATAATGGTGCAAAATTAAGCAATAATCAAGAAGCTAATGCTGCCAAGGATCTTCATGAAGCTGAAGTGTGGACATTATGCAGAATATTCAAAAGGATCCCAACATACAAAAAATACACACCAAGTTTGAAAGATTCTTCATCAGCATCACCATTCATAATCACCAACAAACCCATCAATAATACTAATGTTAACCACCAAACTGATTCCTCAGTAACTTCCATATCATGCAGCTTAGAATCTGATACCAACAACAACAACAACAACAACAATAGCAAGCCATTCTTGACTTTCACTAACACTATGGACATTCAACAATGTGAAAGGAAGCCTCCTCTTGTTGTTGATCATGTTGATGAAAGGAACAACTTTTTGCTACACCATGAATCAATACATCAACAAGCTCCAACAGCAACAACTACTACTCTGTCATCATCATCATTATACTCATCATGGAACCAGCACCATGTTGTGGAGGATTACTTGTTTGGAAATGAGAATTGGGATGATCTTAGATCTGTGGTTGAGTTTGCCACTGACCCTAATAATAATTCCAACAAGGTTTATCTATGA 1137 0.3694 MDMAKLYMNNEYSEEHEQEDDEMMKEEEKEKEEEEEVVLPGFRFHPTDEELVGFYLRRKVEKKPLKIELIKHVDIYKYDPWDLPKVSTSMGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSVNYKYNNNNHNSKKKEEDQGDHHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPSNNNGAKLSNNQEANAAKDLHEAEVWTLCRIFKRIPTYKKYTPSLKDSSSASPFIITNKPINNTNVNHQTDSSVTSISCSLESDTNNNNNNNNSKPFLTFTNTMDIQQCERKPPLVVDHVDERNNFLLHHESIHQQAPTATTTTLSSSSLYSSWNQHHVVEDYLFGNENWDDLRSVVEFATDPNNNSNKVYL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181250g00012 378 SUPERFAMILY NAC domain 37 219 IPR036093 GO:0003677|GO:0006355
Stsc181250g00012 378 ProSiteProfiles NAC domain profile. 38 220 IPR003441 GO:0003677|GO:0006355
Stsc181250g00012 378 MobiDBLite consensus disorder prediction 14 32 - -
Stsc181250g00012 378 MobiDBLite consensus disorder prediction 1 32 - -
Stsc181250g00012 378 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 35 316 - -
Stsc181250g00012 378 Pfam No apical meristem (NAM) protein 40 185 IPR003441 GO:0003677|GO:0006355
Stsc181250g00012 378 Coils Coil 9 37 - -
Stsc181250g00012 378 Gene3D NAC domain 47 223 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181250g00012 Stsc-Chr181250 59712 63056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181250g00012 23 220 NAC Transcription Factor Family AT5G39820 58.095 1.61e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc181250g00012 NAM 1.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181250g00012 - - ahf:112767137 558.14