Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181249g00031 ATGGATAATGATGATAATGGTTTCACGAAAGCTGCTTCATTAGCATGTGCTCAAGTGTTTCCAGCAATCTTGAACGCTGCCATTGAAATGAACTTGTTTGAGATCATATCATCATCATCATTAGGGATGAGTGCCTCTGAAATTGCGTCTAAGCTTCCAAACCAACACTCTGATTTGAGTAAGAGGCTTGAGCGCATGCTGCCACTGCTGGCTGTTCATTCTCTTCTCACTTGCTCAATTCGCACCAACCAAAATGGTGACACCGAGAGGCTCTATTCTCTCTCCCCTGTTGGAATACACTTTACGCCTCATCATCAACATGGAACCTCTTTCCCTTCATTGTTCTCAACTTTAATCTATCAACGATTCCGTCATCTTTGGAAAGATATAAAAGATGCAATAATGGATGGTAGCAATGAGAACCATTTCGAAAAAGTGTATGGAAAGAATGCTTATGAATATATGGGGACAGAGGATAGAGAGTTAGGTAAGCTCTTCGGGCAAGCAATGTATGAAGCTGGGTCTTTAGGGATGAAATCAATTCTTAATGCATACAAAGGCTTTGAGGGAATATCAACATTAGTTGATGTAGGAGGTGGAATTGGACAAGCCTTGATCCAAATTCTCTTGCAATATCCTTCAATTAAAGGAATTAATTTTGATTTGCCTCATGTTGTGAAAAACGCACCCCCTCATCCAGGAATCGAGCATATGGGAGGAGACATGTTTAAAAGTGTTCCAAAAGGCGACGCCATTTTGCTCAAGGTTAGCATGGTAGCTACATATTAA 789 0.4068 MDNDDNGFTKAASLACAQVFPAILNAAIEMNLFEIISSSSLGMSASEIASKLPNQHSDLSKRLERMLPLLAVHSLLTCSIRTNQNGDTERLYSLSPVGIHFTPHHQHGTSFPSLFSTLIYQRFRHLWKDIKDAIMDGSNENHFEKVYGKNAYEYMGTEDRELGKLFGQAMYEAGSLGMKSILNAYKGFEGISTLVDVGGGIGQALIQILLQYPSIKGINFDLPHVVKNAPPHPGIEHMGGDMFKSVPKGDAILLKVSMVATY 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181249g00031 262 Pfam Dimerisation domain 23 71 IPR012967 GO:0046983
Stsc181249g00031 262 Gene3D - 1 100 IPR036388 -
Stsc181249g00031 262 PANTHER O-METHYLTRANSFERASE 14 256 IPR016461 GO:0008168
Stsc181249g00031 262 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 117 255 IPR029063 -
Stsc181249g00031 262 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 12 262 IPR016461 GO:0008168
Stsc181249g00031 262 Gene3D Vaccinia Virus protein VP39 104 259 IPR029063 -
Stsc181249g00031 262 FunFam Caffeic acid 3-O-methyltransferase 1 101 - -
Stsc181249g00031 262 Pfam O-methyltransferase domain 127 255 IPR001077 GO:0008171
Stsc181249g00031 262 SUPERFAMILY "Winged helix" DNA-binding domain 4 104 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181249g00031 Stsc-Chr181249 254962 257080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181249g00031 3 255 Monolignol Biosynthesis Gene Families AT5G54160 47.036 6.81e-72 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181249g00031 - - adu:107471788 338.576