Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181249g00029 ATGGCAATTTTGTCTAAGCTTTTCCACAAGCTTTGTTACAAGATCATAATCCTATTGGCATTCCTTCTAACCGAACTAATCATCTTCATCAGGAAGCTAAAATCATCATCATACACAGGTCCAATCACAACAAAGAAGTACCTCAGATTCATCGAAGAGAAGAACCCAACGATTCGCTATAGCAAGAGGAGTAGTGGCGGTGGATTATTGTCGAAGCTGAAACCGCGACGGCACGTGGAGTGCACGCTTTGCTTATCGGAGTTCAAGGAAGGGGAGAAGCTGAGGAGGCTGAAATGCCAACACACGTTTCACAGGGATTGCTTGGACACGTGGCTTAAGGACTACTGCGCCACGTGTCCGTTGTGTAGGTTGAAAGTGTTGCCTGATGATGTTGTTTCCAAGCATCGTGAGCTTAGAAAGCAAGTCGATTCTAATGGTAACGGGGAACAGTTTACGTATTTTTTAGCAGTGTTATGTGGCGGCGGTAACACTTTGCAGAGTTAG 504 0.4524 MAILSKLFHKLCYKIIILLAFLLTELIIFIRKLKSSSYTGPITTKKYLRFIEEKNPTIRYSKRSSGGGLLSKLKPRRHVECTLCLSEFKEGEKLRRLKCQHTFHRDCLDTWLKDYCATCPLCRLKVLPDDVVSKHRELRKQVDSNGNGEQFTYFLAVLCGGGNTLQS 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181249g00029 167 Pfam Ring finger domain 80 123 IPR001841 -
Stsc181249g00029 167 ProSiteProfiles Zinc finger RING-type profile. 81 123 IPR001841 -
Stsc181249g00029 167 PANTHER - 1 160 - -
Stsc181249g00029 167 SMART ring_2 81 122 IPR001841 -
Stsc181249g00029 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 128 IPR013083 -
Stsc181249g00029 167 SUPERFAMILY RING/U-box 80 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181249g00029 Stsc-Chr181249 229075 229823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181249g00029 21 134 C3H Transcription Factor Family AT1G15100 34.848 2.95e-18 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181249g00029 K16282 - gmx:102668078 169.859