Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181249g00023 ATGACAAATCTCTCAAAGCTCTTCAACCATCTTTGTGGCAGAATAATAATCCTATTAGCATACCTGCTATTAGAATTAATCATCTTAATTAAGAAGCTAGAATCATCATGTACAGCTCCAATTGCAAAGATTAAGTACCTGAGAACCATAGAAGGGAAGAACCCAACGATTCCGTACACAAAGGGGATGAAAGCACGTCACGTGCAGTGCACGGTGTGCTTGTCGGAGTTCAACGAAGGGGAGAAAGTTAGGAGCCTCAAATGCCAACACGTGTTTCATAGGGACTGCTTGGACACGTGGCTCAAAGGTTACCGCGCCACGTGTCCGTTGTGTAGGATAAAAGTGTTGCCGGATGATGTTGTCTTCAACCATGGTGTGCTTCGAAACCAACAAGGCTCTCATGTCAATGGTGGTGAGCGTCTTCCATTCTTTTTGTCCGCGTTACATGTTGGGAATTAG 459 0.4466 MTNLSKLFNHLCGRIIILLAYLLLELIILIKKLESSCTAPIAKIKYLRTIEGKNPTIPYTKGMKARHVQCTVCLSEFNEGEKVRSLKCQHVFHRDCLDTWLKGYRATCPLCRIKVLPDDVVFNHGVLRNQQGSHVNGGERLPFFLSALHVGN 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181249g00023 152 FunFam Putative RING zinc finger domain superfamily protein 43 117 - -
Stsc181249g00023 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 118 IPR013083 -
Stsc181249g00023 152 PANTHER - 1 150 - -
Stsc181249g00023 152 SMART ring_2 70 111 IPR001841 -
Stsc181249g00023 152 Pfam Ring finger domain 69 112 IPR001841 -
Stsc181249g00023 152 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Stsc181249g00023 152 SUPERFAMILY RING/U-box 55 124 - -
Stsc181249g00023 152 CDD RING-H2_PA-TM-RING 69 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181249g00023 Stsc-Chr181249 194115 194640 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181249g00023 55 119 C3H Transcription Factor Family AT2G27940 53.030 6.96e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181249g00023 K16282 - gmx:102661897 152.91