Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181249g00017 ATGGTAGAGTCTGGGGCCTTGGAGGCACTAACTAAATATCTTTCGCTAGGTCCTCAAGATGCAACTGAAGAAGCTGCTACAGATCTGTTAGGAATTCTGTTTAGCAGTGCTGAAATACGGAGACATGAATCTGCATTTGGTGCTGTTACTCAACTTGTGGCTGTCCTGCGTCTAGGAGGAAGAGCTGCAAGGCGTAGTGCTGCAAAAGCCTTAGAAAGTTTATTCTCTGCTGACCATATTAGAAATGCAGATACTGCTCGACAAGCTGTTAAACCCTTGGTAGAGATTCTTAATACAGGTTTAGAGAGGGAGCAGCATGCTGCAATTGCTGCATTGGTTAGGTTACTGAGTGAAAACCCTTCAAGAGCACTTGCTGTTGCAGATGTGGAGATGAATGCAGTGGATGTTCTTTGCAGGATCCTGTCATCAAATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAACTGTGTTGTGTTCTTTTTGCAAACACAAGGATTCGGTCCACGATGGCTGCTGCACGGTGTGTGGAACCTCTGGTCTCTCTCCTTGTAAGTGAGTTTGGTCCAGCTCAACAATCTGTTGTTCGCACATTGGATAGGCTTGTTGATGATGAGCAACTGGCTGAATTAGTTGCTGCACATGGTGCAGTTATTCCTCTTGTTGGCCTACTGTATGGTAGGAACTATGTTCTTCATGAAGCCATCTCGAGAGCTCTGGTCAAGTTAGGTAAAGACAGACCTGCTTGTAAACTAGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTTGACATCCTTCTCGAAGCACCTGACTATCTATGTGCAGCTTTTTCGGAACTCTTGCGTATATTGACAAATAATGCTAGCATAGCTAAAGGACCATCTGCTGCTAAAGTGGTAGAACCCCTGTTTTCAATGCTGACGAGACAAGAATTTGGGCCTGATGGACAACATAGTGCATTGCAGGTTTTGGTTAATATCTTAGAGCATCCACAATGTCGTGCTGATTACACATTGACTTCCCACCAAGCTATTGAGCCACTTATCCCTTTGCTTGATTCTCCAATATCAGCAGTACAACAATTGGCTGCTGAACTTCTCTCCCATCTACTTTTAGAAGAACACCTTCAGAAAGATCCAGTGATTCAACAAGTAATTGGCCCGCTCATAAGAGTTCTTGGATCTGGTATACATATTTTGCAGCAGAGAGCTATGAAGGCCCTTGTTAGTATTGCACATATATGGCCTAATGAAATTGCAAAAGAGGGTGGTGTTGTTGAAATTTCCAAAGTGATATTGCAAGCTGATCCTTCCATTCCTCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGGCATGTGTTCTGCAATTTAGTTCCGAATTCTACTTGGAGGTGCCTGTTGCTGTTTTAGTAAGGTTGCTTCGATCTGGCTCGGAGAGCNNNNNNNNNNGTGATGATGGAACCAGTGCAGAAGCAATGGCTGAAAGTGGTGCCATTGAAGCTCTCTTGGAGCTCCTAAGATCTCATCAATGTGAGGAAACTGCTGCAAGACTCTTAGAAGTATTGCTAAACAATGTGAAGATCAGAGAAACCAAAGTTACTAAATCTGCCATCTTACCATTATCCCAGTACCTCTTGGACCCACAAACCCAAGCACAGCAGCCAAGGTTATTAGCAACTTTGGCTCTTGGTGATTTATTCCAAAATGAGAGTCTTGCTCGAACCAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTCGAAGAGCAACCAACAGAAGAAATGAAAGTTGTAGCCATATGTGCTCTGCAAAACCTTGTGATGTACAGTAGATCAAACAAAAGAGCAGTTGCAGAGGCTGGTGGTGTTCAGGTGGTTCTAGATCTGATAGGTTCTAGTGATCCCGAGACATCTGTTCAGGCTGCAATGTTTATTAAACTTCTCTTTTCAAATCACACTATTCAGGAGTATGCTTCCAGTGAAACAGTCAGAGCAATTACTGCTGCTATTGAGAAGGATTTGTGGGCTACTGGAACTGTGAATGAGGAGTATCTCAAAGCCTTAAATTCTCTATTTAGCAACTTCCCACGATTGAGAGCAACTGAACCAGCAACTCTTAGCATTCCTCATCTTGTTACATCCTTAAAGACAGGCTCAGAGGCTACTCAGGAAGCTGCCTTAGACACACTCTCTCTGCTCAGGCAAGCTTGGACTGCATGCCCTGCAGAAGTTTCAAGAGCTCAATCCATAGCAGCTGCAGATGCTATTCCTTTGCTACAATACTTAATCCAGTCAGGCCCACCTCGGTTTCAGGAGAGGGCAGAATTCCTATTGCAGTGTTTGCCTGGTACGTTGGTGGTGATCATCAAGCGTGGTAATAATATGAAGCAGTCTGTTGGAAACCCAAGTGTTTATTGTAAGCTAACACTTGGCAATACTCCTGCAAGGCAGACCAAGGTGGTCTCAACTGGCCCCAATCCGGAATGGGACGAAAGCTTTTCATGGGCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCACATTTCTTGCAAAAATAAGAGCAAAATGGGAAAGAGTTCATTTGGAAAAGTGACAATCCAAATTGACCGGGTGGTAATGCTGGGAGCAGTATCTGGAGAGTACACACTCTTGCCAGAAAGTAAAAGTGGCCCCTCAAGGAATCTGGAAATAGAATTTCAATGGTCCAACAAGTGA 2721 0.4399 MVESGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVTQLVAVLRLGGRAARRSAAKALESLFSADHIRNADTARQAVKPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMDLKGDAAELCCVLFANTRIRSTMAAARCVEPLVSLLVSEFGPAQQSVVRTLDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEAISRALVKLGKDRPACKLEMVKAGVIESILDILLEAPDYLCAAFSELLRILTNNASIAKGPSAAKVVEPLFSMLTRQEFGPDGQHSALQVLVNILEHPQCRADYTLTSHQAIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVIQQVIGPLIRVLGSGIHILQQRAMKALVSIAHIWPNEIAKEGGVVEISKVILQADPSIPHALWESAASVLACVLQFSSEFYLEVPVAVLVRLLRSGSESXXXXDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQPRLLATLALGDLFQNESLARTSDAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDTLSLLRQAWTACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQERAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPARQTKVVSTGPNPEWDESFSWAFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181249g00017 906 SMART arm_5 331 372 IPR000225 GO:0005515
Stsc181249g00017 906 SMART arm_5 163 203 IPR000225 GO:0005515
Stsc181249g00017 906 SMART arm_5 612 652 IPR000225 GO:0005515
Stsc181249g00017 906 SMART arm_5 485 524 IPR000225 GO:0005515
Stsc181249g00017 906 SMART arm_5 246 285 IPR000225 GO:0005515
Stsc181249g00017 906 SMART arm_5 204 244 IPR000225 GO:0005515
Stsc181249g00017 906 SUPERFAMILY ARM repeat 2 355 IPR016024 -
Stsc181249g00017 906 Gene3D - 304 411 IPR011989 -
Stsc181249g00017 906 SMART C2_3c 786 882 IPR000008 -
Stsc181249g00017 906 CDD C2 787 877 - -
Stsc181249g00017 906 Gene3D - 1 166 IPR011989 -
Stsc181249g00017 906 Gene3D C2 domain 785 906 IPR035892 -
Stsc181249g00017 906 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 1 906 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Stsc181249g00017 906 Gene3D - 167 288 IPR011989 -
Stsc181249g00017 906 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 785 906 - -
Stsc181249g00017 906 SUPERFAMILY ARM repeat 345 783 IPR016024 -
Stsc181249g00017 906 Gene3D - 417 784 IPR011989 -
Stsc181249g00017 906 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 145 379 - -
Stsc181249g00017 906 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 784 903 IPR035892 -
Stsc181249g00017 906 Pfam C2 domain 785 881 IPR000008 -
Stsc181249g00017 906 ProSiteProfiles C2 domain profile. 766 883 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181249g00017 Stsc-Chr181249 114807 120133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181249g00017 1 223 U-box Gene Family AT1G71020 30.172 1.29e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181249g00017 - - gmx:100818900 1570.06