Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181248g00067 ATGGATGCTGAAGACGAGGAAGCTCAACACCTACAACACTCTTATCCACTCCCTTACCTCTCTACCACTTCACCACAATGCCACACAGCCGGAGTGGACCCGGTTGATGCGGCGACCACCGCCGATAATAAAGAAAATCTTGTTGGAGAAGCGGAACAGGCAGCGGTTGCAGCCAATTCGGGCGAAGCGGTTGAAGAGGCGGTGGAGGAGACAGAGATTGGCGATTCGGGAAACGCAGGAGAAGGAGAATTGCAAGTGATGGAAGATAAGGTTGGAGTTGATGGTGATGATGGGGAGAATGAACAACTCCAACGACAAGAGGATGAGATTATGGCAGAGGTAACCGTCGTGGCGAAGGTGGAAAAGGAGGAAACTCCGTTGTTTGCTGAGGACGAAATCAGGGATGCTGAGTATACCGTGATGGAGCAGACGGAGGTACCAAATGAAGCTGCTTTCTTGGTAGAAAGAGAAGAAGAACAAGAAAAAGAAGATGTAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGGACAAAGAAATTGATGCTGCTAGCGGCTTGGCAAATGAAGCTGCTTTATTGGAAGAACCGGAACAAGTCCTAGGACAGCAGCAAGAGAATGCAGACGCCGATGTTGTTGGTGGTGTTGTAGCTAATGAAGCTACTTTCATCGAAGTACACCAAGAAGGACAGCAACAACAAGAAGAACAAGACGATGCTGATGTTGGTGGTGGCATATCAAATGAAACTGCTTTCATGGAAGAGCATGATGAAGAAGATAAACAAGGAGATGAAGAAGAAGAACAGGCTGGTGGCGGTGATGATATAGCAAATGAAACTGCTTTGACAGACGAACAGGAAGAAGAACAAGCCGATGCTGATGGTGATATGCCAAATGAAGCTGCTTTCAGGGAAGAACGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAGGAAGCTGATGGTGGTGGCAATGTAGGGCGCATGGGAGAAGAGACAGAGCCCGGTGAAGAGAGGGAGGAAGTGGAGGAACAGAGTAGAAGTGTGAGTGGTGGGAAGAGGAAGCGGGGTAGTGGGAAGAATTCAAAGTCCACGGGGAGAGCCCCGTCAAGGAAAAAGATGGAAGAAGACGTTTGTTTCATTTGCTTCGACGGGGGAGAGCTTGTTCTTTGCGACCGCAGGGGGTGCCCAAAGGCTTACCATCCTTCGTGCGTTAATCGTGATGAAGCCTTCTTCCGATCCAAGGGAAAATGGAATTGTGGTTGGCATATTTGCAGCAACTGTAAGAAGAATGCTTACTACATGTGTTATACATGTACGTTCTCTTTGTGCAAGGGATGCATCAAAGATGCTGTTATCTTATGTGTTAGGGGAAACAAGGGCTTTTGTGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAACAATCAGGAAAACATGGGACAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGAAAAGCTATCTCTGACTTTTGATGAACTCACACAAGCTAAAAACCCTTGGAAGGGATCTGATGTGCTTCCTTCTAAAGAGGGATCAGCAGATGAATTTCTCGATGCCAATAATGATAGAGGATCTAATTCAGATAGCTCATATGAGAATGTAGATTTGAGTCGTCCCAAAAGAAAGAAGGGCAAAAAACGGACAAAGTCCCGTTCCAAGGAAGGGACTTCATATGGTTCATCTGCAGATGATGGCTCTGAGTGGGCTTCAAAAGAACTTTTGGAGTTTGTGATGCACATGAGAAATGGAGACAGATCCATTTTGTCTCAGTTTGATGTGCAGGCTCTTCTATTAGAGTATATTAAAAGAAATAAGCTTAGAGATCCTCGTAGAAAAAGCCAAATCATTTGTGATGCAAGGCTTCAAAATTTGTTTGGTAAACCAAGAGTGGGCCATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTTCTAAAAGAAGATTCTCAGACTGAAGATATGCAGGGAAGTGTTCTTGATAATGAAATTAGTCATTTGGAAGGACTTCAAACTAATGTGGATGATTTTGCTGCCATTGATAATCATAATGTTAATTTAATATATCTCCGACGTAACTTGGTGGAGGAGCTACTTGAAGATACAGAAAAGTTTCATGATAGAGTTGTTGGTGCTTTTGTGAGAATAAGGATTTCGGGTAGTGGCCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGGACATGCAAAGCAGCAGAACCATATAAAGTTGGTAAAAGGATGACAGATCTCTTGCTAGAAATCTTAAATTTAGACAAGACAGAGATTGTATCAATTGATATTATTTCGAATCAGGAGTTCACAGAGGATGAATGCAAGCGACTCCGCCAAAGCATAAAGTGCGGGCTCATAAATCGGTTGACACTGGGTGACATTCAGGAAAAAGCATTGGCGCTTCAGGCAGTTAGAGTGAATGATTGGCTTGAAACAGAGATAGTGCGGTTAAGTCATCTCCGTGACAGAGCCAGTGAGAAGGGACGCAGAAAAGAGCTCAGAGAATGTGTTGAGAAGTTGCAACTTCTGAAGACTCCTGAAGAACGACAACGCAGATTGGAGGAAATTCCAGAAATTCATGTGGATCCTAAAATGGATCCAAGTCATGAGTCTGAAGAAGATGACAATGAAATGGATGAAAAACGACAAGAAAACTACATGAGACCTAGAGGACCTGCTGCGTTTGGAAGGAGGGGAAGAGAAGTTATTTCTCCTAGGAGTGGTCCTATTTCAAGTGATTCCTGGAGTGCCACGCGGAATTATTCTAATGTGAATCGTGAACTTAGCAGAAATCTGTCTAACAAAGGGTTTTCAAGCAAAGGTGAAGATGTTTCCATTGCTAGTGAAGTACTAAATGATGCTCAATTTCCCCAGGGAAGAGACTGGGGTTCACAATCTAGTGGCCTGGAGAGGCAGAAGCTTTCTTCAAGCTTTGAAACCGGTGCTAAAAGTAACCTTCTGTTATCAACACCTGAGCGTTTTTCTACCGCTTTGTCAGAAACTTCTGCAGTGCTGTCTTCTGCGGGAGCAGCTCCGCCAGTTATGAAAATAAATGAAAGTGAAAAAATATGGCATTATCAGGATCCATCTGGAAAAGTTCAGGGGCCCTTTTCTATGGTGCAGCTACGCAAATGGAGTAACACAGGGTACTTTCCTGCTGATTTGAGGATTTGGAAAGCCAGTGAGAAGCAAGATCAGTCTATGCTCTTAACTGATGCCTTAGCAGGAAAATTTCCTACTGAACAAGCAATGGTGGATAAAACTCCTCCCAAGGCTCAATCAATTATTGATCCACATTACTCATCTTCATACGCTGGAAAGTCTCATTTGGGTACACAAGCTATGGAAGGTCAAGCTGGAGGAAGACTATCATTTGATCAAAATAGTGGATCTCATAATCCTCTTGGTTCTCCTGGACAGAGTGCAACAGGAAGTTGGAGATCTAAAGATAGCATGAATTCTTTAGCAAGTCGACCTTCTTCATTAGCAGTTGAAGTTCCCAAGAATCCTGCAAATGGTTGGGGTTCTGATGCTGGACTCAGAAATGATTCAACAAATCTTCCTTCACCTACACCCCAGACTGCTTCAGGTGGGACTAGGATGCAGGCTTTTGAAAATAAATGGTCTCCAACTCCAACCCCAACCCCTGTCCAACCGGCTGGTTCTCTCTTAGGAAATTCACTCCCTGTTGGGCCTGAAAGTCGTTCAAGTTCACAACCTGGAGTGGCATCAGCATCTAAATTGGATAATAATCAAGTACATCTTCATGCAGTGGCACCTATGATTGCTTCAGGTGTTGACATTCAGACAGCAGGTGCACACTTGCAAAGTCAGAGTGTCAGTAACCATACTTCCCGTGCCGAAGCTCATCAGGGGTGGGGCTCTGGTACGGTTCCCAAGCCTGAAGTACAGACCTGGGGAGGTGCTCAACCTCAAAGGATAGAACCAAATAATCCAGTTACTATGCCTGCACAGCCAACTTCCCATGGGCTCTGGGTTGATACTTTATCTGTTCAGAACTCTGCATCATATAGCAACGGAAATCCTAATGGAGCCTTCCCCACACCGAGCTTTCCAGGCATGACTACACCTACACCTACAGCTGAAACATGGAAACCGCCGGCTTCAAATAGTCAGTCAAACATAACAGCAGCAGCGCCATCCAATGTACCTTATGCTGGTTGGGGTATGCAAGGAAATCAGAATATTAACTGGGGTGGACCTCTACCTGCAAATGTGAATGTAAACTGGATGCATGGACAGGGGCCAGGACCCGGTAATGCAACTCCAGTATGGGGTGCTCCTAGCCAGGGACCACCTCCAGTAAATGCTGTTGGCTGGGTTGCACCTGGTCAAGGACGTCCACATGCAAATGCAAATGCAGGTTGGGTTGCGCCTGGTCAAGGGCCAACGGCTGGCAGTACAAATCCTGGTTGGGGATCTTCATCTGGGAATCCAGGCACGTGGGGAGGCGAGCAAAGCCGCAATGGAGAGAGATTTCACAGCCAGGGCGATCGTGGAACACATGGTGGAGATTCTGGTTATGGGGGTAAATCCTGGAACAGGCAGTCATCATTTAATGGCAGCGGAAGAGGAGGTTCCTCCAGGCTTCCTGTTGGGGGACAAAGAGGAGTCTGCAAGTACCATGAGAGTGGACATTGCAAGAAGGGAGCTTCCTGTGATTTTATGCATACTTAA 4788 0.4534 MDAEDEEAQHLQHSYPLPYLSTTSPQCHTAGVDPVDAATTADNKENLVGEAEQAAVAANSGEAVEEAVEETEIGDSGNAGEGELQVMEDKVGVDGDDGENEQLQRQEDEIMAEVTVVAKVEKEETPLFAEDEIRDAEYTVMEQTEVPNEAAFLVEREEEQEKEDVEEEEEEEEEEGDKEIDAASGLANEAALLEEPEQVLGQQQENADADVVGGVVANEATFIEVHQEGQQQQEEQDDADVGGGISNETAFMEEHDEEDKQGDEEEEQAGGGDDIANETALTDEQEEEQADADGDMPNEAAFREEREEEEEEEEEEEEEEEEEADGGGNVGRMGEETEPGEEREEVEEQSRSVSGGKRKRGSGKNSKSTGRAPSRKKMEEDVCFICFDGGELVLCDRRGCPKAYHPSCVNRDEAFFRSKGKWNCGWHICSNCKKNAYYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQNNQENMGQVDFDDKSSWEYLFKDYYIDLKEKLSLTFDELTQAKNPWKGSDVLPSKEGSADEFLDANNDRGSNSDSSYENVDLSRPKRKKGKKRTKSRSKEGTSYGSSADDGSEWASKELLEFVMHMRNGDRSILSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQTEDMQGSVLDNEISHLEGLQTNVDDFAAIDNHNVNLIYLRRNLVEELLEDTEKFHDRVVGAFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDLLLEILNLDKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTLGDIQEKALALQAVRVNDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPKMDPSHESEEDDNEMDEKRQENYMRPRGPAAFGRRGREVISPRSGPISSDSWSATRNYSNVNRELSRNLSNKGFSSKGEDVSIASEVLNDAQFPQGRDWGSQSSGLERQKLSSSFETGAKSNLLLSTPERFSTALSETSAVLSSAGAAPPVMKINESEKIWHYQDPSGKVQGPFSMVQLRKWSNTGYFPADLRIWKASEKQDQSMLLTDALAGKFPTEQAMVDKTPPKAQSIIDPHYSSSYAGKSHLGTQAMEGQAGGRLSFDQNSGSHNPLGSPGQSATGSWRSKDSMNSLASRPSSLAVEVPKNPANGWGSDAGLRNDSTNLPSPTPQTASGGTRMQAFENKWSPTPTPTPVQPAGSLLGNSLPVGPESRSSSQPGVASASKLDNNQVHLHAVAPMIASGVDIQTAGAHLQSQSVSNHTSRAEAHQGWGSGTVPKPEVQTWGGAQPQRIEPNNPVTMPAQPTSHGLWVDTLSVQNSASYSNGNPNGAFPTPSFPGMTTPTPTAETWKPPASNSQSNITAAAPSNVPYAGWGMQGNQNINWGGPLPANVNVNWMHGQGPGPGNATPVWGAPSQGPPPVNAVGWVAPGQGRPHANANAGWVAPGQGPTAGSTNPGWGSSSGNPGTWGGEQSRNGERFHSQGDRGTHGGDSGYGGKSWNRQSSFNGSGRGGSSRLPVGGQRGVCKYHESGHCKKGASCDFMHT 1595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 1547 1562 - -
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 1482 1568 - -
Stsc181248g00067 1595 Gene3D - 1053 1112 IPR035445 -
Stsc181248g00067 1595 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 369 474 IPR013083 -
Stsc181248g00067 1595 ProSiteProfiles Zinc finger PHD-type profile. 380 446 IPR019787 -
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 1304 1321 - -
Stsc181248g00067 1595 SMART swib_2 595 673 IPR019835 -
Stsc181248g00067 1595 ProSitePatterns Zinc finger PHD-type signature. 383 443 IPR019786 -
Stsc181248g00067 1595 ProSiteProfiles Plus3 domain profile. 703 836 IPR004343 GO:0003677
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 1259 1276 - -
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 1152 1190 - -
Stsc181248g00067 1595 Pfam SWIB/MDM2 domain 595 668 IPR003121 -
Stsc181248g00067 1595 SUPERFAMILY FYVE/PHD zinc finger 379 434 IPR011011 -
Stsc181248g00067 1595 CDD PHD5_NSD 382 427 - -
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 1499 1527 - -
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 87 102 - -
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 144 373 - -
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 279 294 - -
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 304 325 - -
Stsc181248g00067 1595 FunFam Zinc finger CCCH domain-containing protein 19 580 675 - -
Stsc181248g00067 1595 ProSiteProfiles GYF domain profile. 1051 1105 IPR003169 GO:0005515
Stsc181248g00067 1595 SUPERFAMILY SWIB/MDM2 domain 593 669 IPR036885 -
Stsc181248g00067 1595 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 283 1595 - -
Stsc181248g00067 1595 FunFam Zinc finger CCCH domain-containing protein 19 372 472 - -
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 257 272 - -
Stsc181248g00067 1595 CDD SWIB-MDM2_like 593 668 - -
Stsc181248g00067 1595 SMART rtf1 703 813 IPR004343 GO:0003677
Stsc181248g00067 1595 CDD Bbox1 428 454 - -
Stsc181248g00067 1595 Coils Coil 151 182 - -
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 1304 1350 - -
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 544 558 - -
Stsc181248g00067 1595 SUPERFAMILY Plus3-like 704 833 IPR036128 GO:0003677
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 529 590 - -
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 986 1005 - -
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 1208 1241 - -
Stsc181248g00067 1595 ProSiteProfiles Zinc finger C3H1-type profile. 1570 1595 IPR000571 GO:0046872
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 878 947 - -
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 70 102 - -
Stsc181248g00067 1595 Pfam Plus-3 domain 708 811 IPR004343 GO:0003677
Stsc181248g00067 1595 FunFam Zinc finger CCCH domain-containing protein 19 704 833 - -
Stsc181248g00067 1595 Gene3D SWIB/MDM2 domain 583 678 IPR036885 -
Stsc181248g00067 1595 FunFam Zinc finger CCCH domain-containing protein 19 1053 1110 - -
Stsc181248g00067 1595 Gene3D - 705 833 IPR036128 GO:0003677
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 159 179 - -
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 1150 1276 - -
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 1395 1414 - -
Stsc181248g00067 1595 SMART PHD_3 382 428 IPR001965 -
Stsc181248g00067 1595 SMART gyf_5 1052 1107 IPR003169 GO:0005515
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 335 355 - -
Stsc181248g00067 1595 Pfam GYF domain 1054 1094 IPR003169 GO:0005515
Stsc181248g00067 1595 ProSiteProfiles SWIB/MDM2 domain profile. 587 670 IPR003121 -
Stsc181248g00067 1595 Coils Coil 298 326 - -
Stsc181248g00067 1595 CDD GYF 1051 1106 IPR003169 GO:0005515
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 988 1005 - -
Stsc181248g00067 1595 MobiDBLite consensus disorder prediction 878 901 - -
Stsc181248g00067 1595 SUPERFAMILY GYF domain 1041 1104 IPR035445 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181248g00067 Stsc-Chr181248 322701 332537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181248g00067 380 453 PHD Transcription Factor Family AT4G14920 39.189 1.55e-06 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-BAF60b Stsc181248g00067 Plus-3 1.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181248g00067 - - adu:107458951 2395.54