Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc181248g00067 | ATGGATGCTGAAGACGAGGAAGCTCAACACCTACAACACTCTTATCCACTCCCTTACCTCTCTACCACTTCACCACAATGCCACACAGCCGGAGTGGACCCGGTTGATGCGGCGACCACCGCCGATAATAAAGAAAATCTTGTTGGAGAAGCGGAACAGGCAGCGGTTGCAGCCAATTCGGGCGAAGCGGTTGAAGAGGCGGTGGAGGAGACAGAGATTGGCGATTCGGGAAACGCAGGAGAAGGAGAATTGCAAGTGATGGAAGATAAGGTTGGAGTTGATGGTGATGATGGGGAGAATGAACAACTCCAACGACAAGAGGATGAGATTATGGCAGAGGTAACCGTCGTGGCGAAGGTGGAAAAGGAGGAAACTCCGTTGTTTGCTGAGGACGAAATCAGGGATGCTGAGTATACCGTGATGGAGCAGACGGAGGTACCAAATGAAGCTGCTTTCTTGGTAGAAAGAGAAGAAGAACAAGAAAAAGAAGATGTAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGGACAAAGAAATTGATGCTGCTAGCGGCTTGGCAAATGAAGCTGCTTTATTGGAAGAACCGGAACAAGTCCTAGGACAGCAGCAAGAGAATGCAGACGCCGATGTTGTTGGTGGTGTTGTAGCTAATGAAGCTACTTTCATCGAAGTACACCAAGAAGGACAGCAACAACAAGAAGAACAAGACGATGCTGATGTTGGTGGTGGCATATCAAATGAAACTGCTTTCATGGAAGAGCATGATGAAGAAGATAAACAAGGAGATGAAGAAGAAGAACAGGCTGGTGGCGGTGATGATATAGCAAATGAAACTGCTTTGACAGACGAACAGGAAGAAGAACAAGCCGATGCTGATGGTGATATGCCAAATGAAGCTGCTTTCAGGGAAGAACGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAGGAAGCTGATGGTGGTGGCAATGTAGGGCGCATGGGAGAAGAGACAGAGCCCGGTGAAGAGAGGGAGGAAGTGGAGGAACAGAGTAGAAGTGTGAGTGGTGGGAAGAGGAAGCGGGGTAGTGGGAAGAATTCAAAGTCCACGGGGAGAGCCCCGTCAAGGAAAAAGATGGAAGAAGACGTTTGTTTCATTTGCTTCGACGGGGGAGAGCTTGTTCTTTGCGACCGCAGGGGGTGCCCAAAGGCTTACCATCCTTCGTGCGTTAATCGTGATGAAGCCTTCTTCCGATCCAAGGGAAAATGGAATTGTGGTTGGCATATTTGCAGCAACTGTAAGAAGAATGCTTACTACATGTGTTATACATGTACGTTCTCTTTGTGCAAGGGATGCATCAAAGATGCTGTTATCTTATGTGTTAGGGGAAACAAGGGCTTTTGTGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAACAATCAGGAAAACATGGGACAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGAAAAGCTATCTCTGACTTTTGATGAACTCACACAAGCTAAAAACCCTTGGAAGGGATCTGATGTGCTTCCTTCTAAAGAGGGATCAGCAGATGAATTTCTCGATGCCAATAATGATAGAGGATCTAATTCAGATAGCTCATATGAGAATGTAGATTTGAGTCGTCCCAAAAGAAAGAAGGGCAAAAAACGGACAAAGTCCCGTTCCAAGGAAGGGACTTCATATGGTTCATCTGCAGATGATGGCTCTGAGTGGGCTTCAAAAGAACTTTTGGAGTTTGTGATGCACATGAGAAATGGAGACAGATCCATTTTGTCTCAGTTTGATGTGCAGGCTCTTCTATTAGAGTATATTAAAAGAAATAAGCTTAGAGATCCTCGTAGAAAAAGCCAAATCATTTGTGATGCAAGGCTTCAAAATTTGTTTGGTAAACCAAGAGTGGGCCATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTTCTAAAAGAAGATTCTCAGACTGAAGATATGCAGGGAAGTGTTCTTGATAATGAAATTAGTCATTTGGAAGGACTTCAAACTAATGTGGATGATTTTGCTGCCATTGATAATCATAATGTTAATTTAATATATCTCCGACGTAACTTGGTGGAGGAGCTACTTGAAGATACAGAAAAGTTTCATGATAGAGTTGTTGGTGCTTTTGTGAGAATAAGGATTTCGGGTAGTGGCCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGGACATGCAAAGCAGCAGAACCATATAAAGTTGGTAAAAGGATGACAGATCTCTTGCTAGAAATCTTAAATTTAGACAAGACAGAGATTGTATCAATTGATATTATTTCGAATCAGGAGTTCACAGAGGATGAATGCAAGCGACTCCGCCAAAGCATAAAGTGCGGGCTCATAAATCGGTTGACACTGGGTGACATTCAGGAAAAAGCATTGGCGCTTCAGGCAGTTAGAGTGAATGATTGGCTTGAAACAGAGATAGTGCGGTTAAGTCATCTCCGTGACAGAGCCAGTGAGAAGGGACGCAGAAAAGAGCTCAGAGAATGTGTTGAGAAGTTGCAACTTCTGAAGACTCCTGAAGAACGACAACGCAGATTGGAGGAAATTCCAGAAATTCATGTGGATCCTAAAATGGATCCAAGTCATGAGTCTGAAGAAGATGACAATGAAATGGATGAAAAACGACAAGAAAACTACATGAGACCTAGAGGACCTGCTGCGTTTGGAAGGAGGGGAAGAGAAGTTATTTCTCCTAGGAGTGGTCCTATTTCAAGTGATTCCTGGAGTGCCACGCGGAATTATTCTAATGTGAATCGTGAACTTAGCAGAAATCTGTCTAACAAAGGGTTTTCAAGCAAAGGTGAAGATGTTTCCATTGCTAGTGAAGTACTAAATGATGCTCAATTTCCCCAGGGAAGAGACTGGGGTTCACAATCTAGTGGCCTGGAGAGGCAGAAGCTTTCTTCAAGCTTTGAAACCGGTGCTAAAAGTAACCTTCTGTTATCAACACCTGAGCGTTTTTCTACCGCTTTGTCAGAAACTTCTGCAGTGCTGTCTTCTGCGGGAGCAGCTCCGCCAGTTATGAAAATAAATGAAAGTGAAAAAATATGGCATTATCAGGATCCATCTGGAAAAGTTCAGGGGCCCTTTTCTATGGTGCAGCTACGCAAATGGAGTAACACAGGGTACTTTCCTGCTGATTTGAGGATTTGGAAAGCCAGTGAGAAGCAAGATCAGTCTATGCTCTTAACTGATGCCTTAGCAGGAAAATTTCCTACTGAACAAGCAATGGTGGATAAAACTCCTCCCAAGGCTCAATCAATTATTGATCCACATTACTCATCTTCATACGCTGGAAAGTCTCATTTGGGTACACAAGCTATGGAAGGTCAAGCTGGAGGAAGACTATCATTTGATCAAAATAGTGGATCTCATAATCCTCTTGGTTCTCCTGGACAGAGTGCAACAGGAAGTTGGAGATCTAAAGATAGCATGAATTCTTTAGCAAGTCGACCTTCTTCATTAGCAGTTGAAGTTCCCAAGAATCCTGCAAATGGTTGGGGTTCTGATGCTGGACTCAGAAATGATTCAACAAATCTTCCTTCACCTACACCCCAGACTGCTTCAGGTGGGACTAGGATGCAGGCTTTTGAAAATAAATGGTCTCCAACTCCAACCCCAACCCCTGTCCAACCGGCTGGTTCTCTCTTAGGAAATTCACTCCCTGTTGGGCCTGAAAGTCGTTCAAGTTCACAACCTGGAGTGGCATCAGCATCTAAATTGGATAATAATCAAGTACATCTTCATGCAGTGGCACCTATGATTGCTTCAGGTGTTGACATTCAGACAGCAGGTGCACACTTGCAAAGTCAGAGTGTCAGTAACCATACTTCCCGTGCCGAAGCTCATCAGGGGTGGGGCTCTGGTACGGTTCCCAAGCCTGAAGTACAGACCTGGGGAGGTGCTCAACCTCAAAGGATAGAACCAAATAATCCAGTTACTATGCCTGCACAGCCAACTTCCCATGGGCTCTGGGTTGATACTTTATCTGTTCAGAACTCTGCATCATATAGCAACGGAAATCCTAATGGAGCCTTCCCCACACCGAGCTTTCCAGGCATGACTACACCTACACCTACAGCTGAAACATGGAAACCGCCGGCTTCAAATAGTCAGTCAAACATAACAGCAGCAGCGCCATCCAATGTACCTTATGCTGGTTGGGGTATGCAAGGAAATCAGAATATTAACTGGGGTGGACCTCTACCTGCAAATGTGAATGTAAACTGGATGCATGGACAGGGGCCAGGACCCGGTAATGCAACTCCAGTATGGGGTGCTCCTAGCCAGGGACCACCTCCAGTAAATGCTGTTGGCTGGGTTGCACCTGGTCAAGGACGTCCACATGCAAATGCAAATGCAGGTTGGGTTGCGCCTGGTCAAGGGCCAACGGCTGGCAGTACAAATCCTGGTTGGGGATCTTCATCTGGGAATCCAGGCACGTGGGGAGGCGAGCAAAGCCGCAATGGAGAGAGATTTCACAGCCAGGGCGATCGTGGAACACATGGTGGAGATTCTGGTTATGGGGGTAAATCCTGGAACAGGCAGTCATCATTTAATGGCAGCGGAAGAGGAGGTTCCTCCAGGCTTCCTGTTGGGGGACAAAGAGGAGTCTGCAAGTACCATGAGAGTGGACATTGCAAGAAGGGAGCTTCCTGTGATTTTATGCATACTTAA | 4788 | 0.4534 | MDAEDEEAQHLQHSYPLPYLSTTSPQCHTAGVDPVDAATTADNKENLVGEAEQAAVAANSGEAVEEAVEETEIGDSGNAGEGELQVMEDKVGVDGDDGENEQLQRQEDEIMAEVTVVAKVEKEETPLFAEDEIRDAEYTVMEQTEVPNEAAFLVEREEEQEKEDVEEEEEEEEEEGDKEIDAASGLANEAALLEEPEQVLGQQQENADADVVGGVVANEATFIEVHQEGQQQQEEQDDADVGGGISNETAFMEEHDEEDKQGDEEEEQAGGGDDIANETALTDEQEEEQADADGDMPNEAAFREEREEEEEEEEEEEEEEEEEADGGGNVGRMGEETEPGEEREEVEEQSRSVSGGKRKRGSGKNSKSTGRAPSRKKMEEDVCFICFDGGELVLCDRRGCPKAYHPSCVNRDEAFFRSKGKWNCGWHICSNCKKNAYYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQNNQENMGQVDFDDKSSWEYLFKDYYIDLKEKLSLTFDELTQAKNPWKGSDVLPSKEGSADEFLDANNDRGSNSDSSYENVDLSRPKRKKGKKRTKSRSKEGTSYGSSADDGSEWASKELLEFVMHMRNGDRSILSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQTEDMQGSVLDNEISHLEGLQTNVDDFAAIDNHNVNLIYLRRNLVEELLEDTEKFHDRVVGAFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDLLLEILNLDKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTLGDIQEKALALQAVRVNDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPKMDPSHESEEDDNEMDEKRQENYMRPRGPAAFGRRGREVISPRSGPISSDSWSATRNYSNVNRELSRNLSNKGFSSKGEDVSIASEVLNDAQFPQGRDWGSQSSGLERQKLSSSFETGAKSNLLLSTPERFSTALSETSAVLSSAGAAPPVMKINESEKIWHYQDPSGKVQGPFSMVQLRKWSNTGYFPADLRIWKASEKQDQSMLLTDALAGKFPTEQAMVDKTPPKAQSIIDPHYSSSYAGKSHLGTQAMEGQAGGRLSFDQNSGSHNPLGSPGQSATGSWRSKDSMNSLASRPSSLAVEVPKNPANGWGSDAGLRNDSTNLPSPTPQTASGGTRMQAFENKWSPTPTPTPVQPAGSLLGNSLPVGPESRSSSQPGVASASKLDNNQVHLHAVAPMIASGVDIQTAGAHLQSQSVSNHTSRAEAHQGWGSGTVPKPEVQTWGGAQPQRIEPNNPVTMPAQPTSHGLWVDTLSVQNSASYSNGNPNGAFPTPSFPGMTTPTPTAETWKPPASNSQSNITAAAPSNVPYAGWGMQGNQNINWGGPLPANVNVNWMHGQGPGPGNATPVWGAPSQGPPPVNAVGWVAPGQGRPHANANAGWVAPGQGPTAGSTNPGWGSSSGNPGTWGGEQSRNGERFHSQGDRGTHGGDSGYGGKSWNRQSSFNGSGRGGSSRLPVGGQRGVCKYHESGHCKKGASCDFMHT | 1595 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 1547 | 1562 | - | - | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 1482 | 1568 | - | - | |
Stsc181248g00067 | 1595 | Gene3D | - | 1053 | 1112 | IPR035445 | - | |
Stsc181248g00067 | 1595 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 369 | 474 | IPR013083 | - | |
Stsc181248g00067 | 1595 | ProSiteProfiles | Zinc finger PHD-type profile. | 380 | 446 | IPR019787 | - | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 1304 | 1321 | - | - | |
Stsc181248g00067 | 1595 | SMART | swib_2 | 595 | 673 | IPR019835 | - | |
Stsc181248g00067 | 1595 | ProSitePatterns | Zinc finger PHD-type signature. | 383 | 443 | IPR019786 | - | |
Stsc181248g00067 | 1595 | ProSiteProfiles | Plus3 domain profile. | 703 | 836 | IPR004343 | GO:0003677 | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 1259 | 1276 | - | - | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 1152 | 1190 | - | - | |
Stsc181248g00067 | 1595 | Pfam | SWIB/MDM2 domain | 595 | 668 | IPR003121 | - | |
Stsc181248g00067 | 1595 | SUPERFAMILY | FYVE/PHD zinc finger | 379 | 434 | IPR011011 | - | |
Stsc181248g00067 | 1595 | CDD | PHD5_NSD | 382 | 427 | - | - | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 1499 | 1527 | - | - | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 87 | 102 | - | - | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 144 | 373 | - | - | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 279 | 294 | - | - | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 304 | 325 | - | - | |
Stsc181248g00067 | 1595 | FunFam | Zinc finger CCCH domain-containing protein 19 | 580 | 675 | - | - | |
Stsc181248g00067 | 1595 | ProSiteProfiles | GYF domain profile. | 1051 | 1105 | IPR003169 | GO:0005515 | |
Stsc181248g00067 | 1595 | SUPERFAMILY | SWIB/MDM2 domain | 593 | 669 | IPR036885 | - | |
Stsc181248g00067 | 1595 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED | 283 | 1595 | - | - | |
Stsc181248g00067 | 1595 | FunFam | Zinc finger CCCH domain-containing protein 19 | 372 | 472 | - | - | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 257 | 272 | - | - | |
Stsc181248g00067 | 1595 | CDD | SWIB-MDM2_like | 593 | 668 | - | - | |
Stsc181248g00067 | 1595 | SMART | rtf1 | 703 | 813 | IPR004343 | GO:0003677 | |
Stsc181248g00067 | 1595 | CDD | Bbox1 | 428 | 454 | - | - | |
Stsc181248g00067 | 1595 | Coils | Coil | 151 | 182 | - | - | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 1304 | 1350 | - | - | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 544 | 558 | - | - | |
Stsc181248g00067 | 1595 | SUPERFAMILY | Plus3-like | 704 | 833 | IPR036128 | GO:0003677 | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 529 | 590 | - | - | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 986 | 1005 | - | - | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 1208 | 1241 | - | - | |
Stsc181248g00067 | 1595 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1570 | 1595 | IPR000571 | GO:0046872 | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 878 | 947 | - | - | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 70 | 102 | - | - | |
Stsc181248g00067 | 1595 | Pfam | Plus-3 domain | 708 | 811 | IPR004343 | GO:0003677 | |
Stsc181248g00067 | 1595 | FunFam | Zinc finger CCCH domain-containing protein 19 | 704 | 833 | - | - | |
Stsc181248g00067 | 1595 | Gene3D | SWIB/MDM2 domain | 583 | 678 | IPR036885 | - | |
Stsc181248g00067 | 1595 | FunFam | Zinc finger CCCH domain-containing protein 19 | 1053 | 1110 | - | - | |
Stsc181248g00067 | 1595 | Gene3D | - | 705 | 833 | IPR036128 | GO:0003677 | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 159 | 179 | - | - | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 1150 | 1276 | - | - | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 1395 | 1414 | - | - | |
Stsc181248g00067 | 1595 | SMART | PHD_3 | 382 | 428 | IPR001965 | - | |
Stsc181248g00067 | 1595 | SMART | gyf_5 | 1052 | 1107 | IPR003169 | GO:0005515 | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 335 | 355 | - | - | |
Stsc181248g00067 | 1595 | Pfam | GYF domain | 1054 | 1094 | IPR003169 | GO:0005515 | |
Stsc181248g00067 | 1595 | ProSiteProfiles | SWIB/MDM2 domain profile. | 587 | 670 | IPR003121 | - | |
Stsc181248g00067 | 1595 | Coils | Coil | 298 | 326 | - | - | |
Stsc181248g00067 | 1595 | CDD | GYF | 1051 | 1106 | IPR003169 | GO:0005515 | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 988 | 1005 | - | - | |
Stsc181248g00067 | 1595 | MobiDBLite | consensus disorder prediction | 878 | 901 | - | - | |
Stsc181248g00067 | 1595 | SUPERFAMILY | GYF domain | 1041 | 1104 | IPR035445 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc181248g00067 | Stsc-Chr181248 | 322701 | 332537 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc181248g00067 | 380 | 453 | PHD Transcription Factor Family | AT4G14920 | 39.189 | 1.55e-06 | 51.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SWI or SNF-BAF60b | Stsc181248g00067 | Plus-3 | 1.1e-22 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc181248g00067 | - | - | adu:107458951 | 2395.54 |