Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181248g00061 ATGAAGATCCAGTGTGATGTGTGTGACAAAGACGAGGCTTCTCTATTCTGCCCTGCAGATGAAGCCGCCCTCTGCCATGCCTGTGACCGTACAATCCACCATGCTAACAAGCTCGCAACCAAGCACACGCGCTTCGCTCTCCACCACCCTTCCTCCTCCTCCTCCAAAGACACCCCTCGCTGTGATATCTGCCAAGACAGGCGTGCTTATCTCTTTTGCAAAGAAGACAGAGCAATACTTTGCAGAGAATGCGACCTTCCTATCCACAAAGCCAACCAACACACGCAGAATCATAGCAGGTTCCTTCTCACCGGTGTCAAGCTCTCTGCTACCTCCTTCGACACCACGGCTTCCTCGTCGGTCACCAGCTCAACGGAGGCAAGAACCTCCCGTTCAAGGTTGAAGAGATCCACATCCACTGCTTTCAGATCATCATCATCCAATAATAATATTGAAGACAACATCAACATTATTCCTGTGGCCACTACTAGTAATAGCGACACCGCTTCGCCTTCCACAAGCAGCATATCCGAATACTTGATTCAAACCATTCCCGGTTACTGCTTCGAAGACCTTCTTGATGCTTCCTTTCCACCTAATAATGGTTTCTGA 612 0.4935 MKIQCDVCDKDEASLFCPADEAALCHACDRTIHHANKLATKHTRFALHHPSSSSSKDTPRCDICQDRRAYLFCKEDRAILCRECDLPIHKANQHTQNHSRFLLTGVKLSATSFDTTASSSVTSSTEARTSRSRLKRSTSTAFRSSSSNNNIEDNINIIPVATTSNSDTASPSTSSISEYLIQTIPGYCFEDLLDASFPPNNGF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181248g00061 203 CDD Bbox1_BBX-like 61 103 - -
Stsc181248g00061 203 CDD Bbox1_BBX-like 5 47 - -
Stsc181248g00061 203 MobiDBLite consensus disorder prediction 119 147 - -
Stsc181248g00061 203 Pfam B-box zinc finger 58 95 IPR000315 GO:0008270
Stsc181248g00061 203 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Stsc181248g00061 203 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270
Stsc181248g00061 203 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 195 - -
Stsc181248g00061 203 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Stsc181248g00061 203 FunFam B-box zinc finger protein 21 1 101 - -
Stsc181248g00061 203 SMART bboxneu5 56 103 IPR000315 GO:0008270
Stsc181248g00061 203 SMART bboxneu5 4 47 IPR000315 GO:0008270
Stsc181248g00061 203 Gene3D Classic Zinc Finger 1 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181248g00061 Stsc-Chr181248 278882 280062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181248g00061 1 198 C2C2-CO-like Transcription Factor Family AT1G75540 50.481 6.14e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Stsc181248g00061 zf-B_box 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181248g00061 - - adu:107458960 276.174