Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181248g00060 ATGCTAACGGGAACAAACAGGAGTAGGAGTAGAGAAGAAGAAGAAGAAGAAAAAGGGATAAAGTTGGGTCCAATGATAAGTAGCGGAAGTAGTTCAAGAAAGTGCCAAGACTGTGGGAATCAAGCGAAGAAGGAGTGTTCATATTGGAGGTGCAGAACCTGCTGCAAGAACAAGGGCTTCCATTGCCAAACCCATGTCAACAGCACTTGGGTCCCCGTCCACACAAGGCGCCAAAGGGAAACGGAAACCCAAGATTTAGATAGTAACCACCACTTTCAGTTTCAGTTGCACCACCCAATTCCACCACCGCATATCTCCAAAAAGCACAAACCTGCAGGTGTACACAAGTTAAAGTTCCCATCTGCTACGAATTCCATGGCTGTATTTCGGCGTGTTGAGGTTAGATCCATGGATGGTGCTGTTAACGAAATTGCCTATCAGACATGTGTCAACATTGGAGGACATGTATTTAGTGGTCTTGTATATGATCAAGGCCCTGATTTTCTTGATGATCATCAGCAGCAGCAGAATCTCAATCATGGTGCAATTATGCCTCCAGATAATGATGATGAGCCTTTCTTGCCACCGCCACCATCTTCGAATTCAGAGCCGCTATGTACGCCCTACTTCCCATTCCCAAAACCATAG 648 0.4568 MLTGTNRSRSREEEEEEKGIKLGPMISSGSSSRKCQDCGNQAKKECSYWRCRTCCKNKGFHCQTHVNSTWVPVHTRRQRETETQDLDSNHHFQFQLHHPIPPPHISKKHKPAGVHKLKFPSATNSMAVFRRVEVRSMDGAVNEIAYQTCVNIGGHVFSGLVYDQGPDFLDDHQQQQNLNHGAIMPPDNDDEPFLPPPPSSNSEPLCTPYFPFPKP 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181248g00060 215 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 25 180 IPR007818 GO:0003700|GO:0006355
Stsc181248g00060 215 Pfam Domain of unknown function (DUF702) 32 167 - -
Stsc181248g00060 215 MobiDBLite consensus disorder prediction 7 21 - -
Stsc181248g00060 215 MobiDBLite consensus disorder prediction 178 215 - -
Stsc181248g00060 215 NCBIfam LRP1 C-terminal domain 118 166 IPR006511 -
Stsc181248g00060 215 NCBIfam putative zinc finger domain, LRP1 type 34 75 IPR006510 -
Stsc181248g00060 215 MobiDBLite consensus disorder prediction 1 35 - -
Stsc181248g00060 215 MobiDBLite consensus disorder prediction 189 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181248g00060 Stsc-Chr181248 274812 275530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181248g00060 33 198 C2H2 Transcription Factor Family AT2G21400 42.442 1.98e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Stsc181248g00060 DUF702 1.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181248g00060 - - gmx:102663693 180.259