LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181248g00056	ATGCCTACCCTCCTTATGATCATTGTGTTGTTGTTGATGATCTGCATCTCATGCACAACAAATGGTTTAAGCAGCTTCTCTCCGAAAGATAACTTCCTGATAGATTGCGCTGCTGAAAAAGTAGCAAGTCTCCCAGATGGAAGACAATTCAAAACAGATTCTGAATCCAAATCGTTCTTGCAAGCAACTGATGACACCAAAGTCTCTTCCAACGACCCAATTCCCAACCTACCCTCCCCAATCTACTCAAACGCAAGGATTTTCATTAAAAAAGCTAAATACACATTCCCTCTCACTCAACCTGGTTTTCATTGGCTTCGCCTTCATTTCTATCCAATCAAGAACACCATCTTTGAACTTCACACGGCCACCTTCTCTGTCAACACAGATAAGTATGTTCTTCTTCATTCCTTCAACGTCAACAATGACACCCCTCTTCTCAAGGAGTTCCTCATCAACGCCACCGACCCTCACTTCTCCATATACTTCATTCCAACCAAGGACTCTGCAGCATTCATCAATGCCATTGAGCTTGTTTCAGCTCCTGATAACCTCATCTTCGACACTGGCTCATCCCTTTTCCCCGTTGGAGACTTTTCAGGCTTGACCAACTACGCTTTCCAAACGCTTCACCGCATCAACAATGGTGGTCCTTTGATAACATCATCAAATGACACATTGGCAAGAACATGGCAATCTGATTCCGATGGATCTTACCTCACAAACAAGAACTTGGCAAAGAGTGTCTCTGTGGCTACCACTGCCATTAAGTTCCCTTCGAATACACCAACCATTTCTCCTCTGATTGCACCGCCAACAGTGTATGCTTCTGCCATGGAGATGGGTGATGCTGGTGTTGACGAGCCTAATTTCAACGTGTCATGGAAATTTGATGTGGACACAGCTTTTGATTACCTTGTAAGGCTGCATTTCTGTGATATTGTGAGCAAAGGGCTAAACCAACTCTACTTCAATGTATATGTGAATGGGAAGATGGCAGTTCCCAATTTGGATGTGTCAGCTATTACTGGAGCCTTGGCAACACCTTATTACAAGGACATTGTGGTTAATGCTTCTTTGATGTCTGATGAGGGGCTCACGGTTCAGGTTGGTCCTGCAAATGCTGAGGGTGGGAATGGCAATGCAATTATGAATGGAATTGAGGTCTTGAAGATAAGCAATTCTGTCGACAGTTTGGATGGTGAATTTGGTGTTGATGGAAGAAAAGCCGGTGGTTCAATCCGCGGCAAGGTGGCTACAGCTGGTTTTGCTATGATGTTTGGAGCCTTTGTAGGTCTTGGTGTGATGGTTATCAGGTGGAACAAGAGGCCGCCGGATTGGCAAAAAAGGAAAAGTTTCTCTTCATGGTTACTCCCTGTGCATGCAGGTGACACAAGCTTCATGAATAGCAAGACCTCAATGGGGTCTCACAAGAGCAATTTCTACTCCTCAACCATGGGACTAGGCAGGTTTTTCTCCCTTGCAGAGTTGCAAGAAGCTACCAAGAACTTTGACTCCAAAGAAATTATAGGTGTTGGAGGGTTTGGTAATGTGTACTTGGGTGTGATTGATGAAGGGACTACTAAAGTTGCTGTTAAGAGAGGGAATCCACAATCAGAACAAGGCATCAATGAGTTCCAAACTGAAATTCAAATGCTGTCTAAGCTAAGACACAGGCATTTGGTTTCCTTGATTGGATACTGTGATGAAAACTCTGAGATGATTCTGGTTTATGAATACATGCCCAATGGACATTTCAGGGACCATCTTTATGGCAAGAACTTGCCTCCTCTTTCTTGGAAGCAGAGATTAGAGATCTGCATAGGAGCGGCTCGCGGCCTTCACTACCTCCACACGGGCACAGCACAAGGTATCATCCACCGTGATGTTAAGACCACCAACATTCTCCTTGATGAGAATTTCAACGCCAAGGTTTCTGATTTCGGGCTCTCCAAGGATGCACCAATGGGGCAAGGCCATGTGAGCACTGCCGTTAAGGGTAGCTTTGGATATCTTGATCCTGAGTATTTCAGGAAGCAACAGTTGACAGAAAAATCAGATGTGTATTCATTTGGGGTGGTGTTGCTTGAGGCGCTATGCGCGAGGGCGGCCATTAATCCTCAGTTGCCTAGAGAACAAGTAAACCTGGCTGATTGGGCAATGCAGTGGAAGAGGAAGGGGATGGTTGATAAAATTGTAGATCCTCATCTTGCTGGTTCTTTGAATGCTGAATCCATGAAGAAATTTGCAGAGGCAGCTGAGAAGTGCTTGGCAGATTATGGTGTTGATAGGCCTACAATGGGGGATGTGTTGTGGAACTTGGAGTATGCATTGCAGCTTCAAGATGCATTCACACAAGAAGGAAAGGCTCAAGATCCCAGCAACTCCACTGCTGCTGTTCCTGCCCCTCCAACACCACCTCCTAATAATGTCAACAACCCCACCATAGTTGATGATCATAGTGCATCCAGCAGGGAACGGGAACTTCCTCCTCAACAAGTAAATGAAAATAATAATGGACCAACCCAAGTACCCCCCACTACTACTGATGATTATTCTGGAACAATGTTTTCCCAAGTTAACAATCTTAGTGGTAGATGA	2601	0.4487	MPTLLMIIVLLLMICISCTTNGLSSFSPKDNFLIDCAAEKVASLPDGRQFKTDSESKSFLQATDDTKVSSNDPIPNLPSPIYSNARIFIKKAKYTFPLTQPGFHWLRLHFYPIKNTIFELHTATFSVNTDKYVLLHSFNVNNDTPLLKEFLINATDPHFSIYFIPTKDSAAFINAIELVSAPDNLIFDTGSSLFPVGDFSGLTNYAFQTLHRINNGGPLITSSNDTLARTWQSDSDGSYLTNKNLAKSVSVATTAIKFPSNTPTISPLIAPPTVYASAMEMGDAGVDEPNFNVSWKFDVDTAFDYLVRLHFCDIVSKGLNQLYFNVYVNGKMAVPNLDVSAITGALATPYYKDIVVNASLMSDEGLTVQVGPANAEGGNGNAIMNGIEVLKISNSVDSLDGEFGVDGRKAGGSIRGKVATAGFAMMFGAFVGLGVMVIRWNKRPPDWQKRKSFSSWLLPVHAGDTSFMNSKTSMGSHKSNFYSSTMGLGRFFSLAELQEATKNFDSKEIIGVGGFGNVYLGVIDEGTTKVAVKRGNPQSEQGINEFQTEIQMLSKLRHRHLVSLIGYCDENSEMILVYEYMPNGHFRDHLYGKNLPPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDENFNAKVSDFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRKQQLTEKSDVYSFGVVLLEALCARAAINPQLPREQVNLADWAMQWKRKGMVDKIVDPHLAGSLNAESMKKFAEAAEKCLADYGVDRPTMGDVLWNLEYALQLQDAFTQEGKAQDPSNSTAAVPAPPTPPPNNVNNPTIVDDHSASSRERELPPQQVNENNNGPTQVPPTTTDDYSGTMFSQVNNLSGR	866

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc181248g00056	866	FunFam	Receptor-like protein kinase FERONIA	581	793	-	-
	Stsc181248g00056	866	FunFam	Receptor-like protein kinase FERONIA	206	394	-	-
	Stsc181248g00056	866	Pfam	Protein tyrosine and serine/threonine kinase	507	712	IPR001245	GO:0004672\|GO:0006468
	Stsc181248g00056	866	FunFam	receptor-like protein kinase FERONIA	467	580	-	-
	Stsc181248g00056	866	ProSitePatterns	Protein kinases ATP-binding region signature.	510	533	IPR017441	GO:0005524
	Stsc181248g00056	866	MobiDBLite	consensus disorder prediction	827	866	-	-
	Stsc181248g00056	866	Gene3D	Phosphorylase Kinase; domain 1	490	580	-	-
	Stsc181248g00056	866	FunFam	Putative receptor-like protein kinase	31	182	-	-
	Stsc181248g00056	866	Gene3D	-	205	394	-	-
	Stsc181248g00056	866	Gene3D	-	31	182	-	-
	Stsc181248g00056	866	SUPERFAMILY	Protein kinase-like (PK-like)	488	772	IPR011009	-
	Stsc181248g00056	866	ProSiteProfiles	Protein kinase domain profile.	504	777	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181248g00056	866	Gene3D	Transferase(Phosphotransferase) domain 1	581	798	-	-
	Stsc181248g00056	866	Pfam	Malectin-like domain	34	391	IPR024788	-
	Stsc181248g00056	866	SMART	serkin_6	504	777	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181248g00056	866	PANTHER	OS07G0166700 PROTEIN	490	781	IPR045272	GO:0004714\|GO:0006468
	Stsc181248g00056	866	CDD	STKc_IRAK	510	775	-	-
	Stsc181248g00056	866	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	625	637	IPR008271	GO:0004672\|GO:0006468
	Stsc181248g00056	866	MobiDBLite	consensus disorder prediction	785	866	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181248g00056	Stsc-Chr181248	256339	258939	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc181248g00056	24	866	Receptor kinase-like Gene Family	AT4G39110	65.647	0.0	1137

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Stsc181248g00056		Malectin_like	3e-35	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc181248g00056	-		-	tpra:123893803	1300.42