Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181248g00045 ATGCTGCACTGTCTGAACAGTAACGCTTCGGGAAATGGTGGTGCCACCTGCTCCGATATGACACTCCTCCAAAGGCAAAGGGCTATCATCAAGTTCCAACAACAACTTCACACCTCCTCCTCTCCTACTTCCTCTTCTCCTTCAGGATTCCCTCCTCCTCCTCCTACTACTTCTGCTGCTTCTTTTGATCTCAATTCTTCAATCTCAAGGACTTCCAGTTGTCCACTACCTTCTCTTCCTGACGCCAAACAGACTACTCCTCTTAATAACAAGAGAAAAACTCTCAACACCAAGGGTGCTGTTTCAGATAATAATAATGATAACAAGGACAAGAAGAGGGTCAAAGTGGATGCTCACCATCACACACCAATCCCGCCGGGGAAGAAAGCCACGCAAGCTAGTGAGAAGCCAGATTACATTCATGTCCGAGCACGCCGGGGCCAAGCCACTGATAGCCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATCAGCGAGAGAATGAAGTTCTTGCAGGATTTAGTGCCCGGTTGCAACAAGATTACTGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTCCAGTCCCTTCAACGACAAGTTGAGTTCTTGTCAATGAAATTAGCTGCTGTGAATCCAAGACTTGACTTCAACATTGATGATCTCTTTGCCAGAGAGGTGTTTCCTGCTTGTGCTGCAAGTTTTCCAGCATTAGGAATGTCACCAGAGATGCCTCACCCTGCTTCCTATCTTCACTTCAATTCCCCACCACAAATAGATGCAGGGGTAAACCCTCAAGATATCAGTCTTCGAAGGAGCATAAGTGCTCCAGTATCCATGCCAGAAACCTTTCTTGATTCCTCCTGTTTCACTCAAACTCTGCCCCCCTCAACATGGGAAGGTGATTTTCAAAACCTTTACAGTAGTGTGGCTTTTGATCAAGCAAGAGCAGCATCATTTCCTTCTCAGCTATTCACAGGTCTAGTTGAACCAAACAATCTAAAGATGGAGATGGAGATGTAG 1026 0.4542 MLHCLNSNASGNGGATCSDMTLLQRQRAIIKFQQQLHTSSSPTSSSPSGFPPPPPTTSAASFDLNSSISRTSSCPLPSLPDAKQTTPLNNKRKTLNTKGAVSDNNNDNKDKKRVKVDAHHHTPIPPGKKATQASEKPDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDDLFAREVFPACAASFPALGMSPEMPHPASYLHFNSPPQIDAGVNPQDISLRRSISAPVSMPETFLDSSCFTQTLPPSTWEGDFQNLYSSVAFDQARAASFPSQLFTGLVEPNNLKMEMEM 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181248g00045 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 198 IPR011598 GO:0046983
Stsc181248g00045 341 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 38 250 IPR024097 GO:0006355
Stsc181248g00045 341 MobiDBLite consensus disorder prediction 34 136 - -
Stsc181248g00045 341 CDD bHLH_AtBPE_like 138 223 - -
Stsc181248g00045 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 217 IPR036638 GO:0046983
Stsc181248g00045 341 FunFam Basic helix-loop-helix transcription factor 145 217 - -
Stsc181248g00045 341 MobiDBLite consensus disorder prediction 104 124 - -
Stsc181248g00045 341 Pfam Helix-loop-helix DNA-binding domain 152 199 IPR011598 GO:0046983
Stsc181248g00045 341 SMART finulus 154 204 IPR011598 GO:0046983
Stsc181248g00045 341 MobiDBLite consensus disorder prediction 59 103 - -
Stsc181248g00045 341 Gene3D - 145 219 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181248g00045 Stsc-Chr181248 220960 222894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181248g00045 129 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 55.330 6.73e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc181248g00045 HLH 4.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181248g00045 - - gmx:100798855 339.347