Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181248g00042 ATGCGAGTGAAGCACAGCTCAGGCACGATCCCACTGGTGTCAAAGGAGATTGTGGAGGTTAATGCATTGGATCTCAAAATGGAAGAAGAAGTAGAAGATGTTGATCCTGATCGGAAGAAGAAAGAGAAGCAGCAGAAGAAGGAGAAGGAGGAATGTGAGATCAAGATTGTTGAGGGAATCGAAGGGAGTGAGGAGGAGGTGTCGGTGGAGTGTTCGCCAAACATTGGATGGGGGAGGTGGTACAGCATGTCGGAAGTGGAAGAGGCGACGGATGGGCTTGCAGAGGGGAATGTGATAGGAGAAGGAGGGTATGGGATTGTGTACAGAGGTGTTCTTCGCGACGGTTCTGTCGTCGCTGTCAAGAATCTTCTTAACAATAAGGGCCAAGCAGAGAAAGAGTTTAAGGTGGAGGTTGAGGCCATCGGAAAAGTGAGGCACAAGAATTTGGTGCGTTTACTTGGATACTGTGCACAAGGTGCTAAGAGGATGCTTGTTTATGAATACGTTGACAATGGAACTTTGGAGCAGTGGCTACATGGTGATGTAGGCCCTGTTAGCCCCTTGACATGGGATATACGAATGAAGATTGCTGTTGGCACTGCCAAAGGATTAGCCTACTTGCATGAAGGCTTAGAACCCAAAGTTGTGCACCGAGATGTAAAATCCAGTAACATTCTTTTGGACAAAAATTGGAATGCCAAAGTATCTGATTTTGGACTAGCCAAGCTCTTAGGCTCTGAGAAAAGCTACGTCACAACGCGTGTAATGGGAACATTTGGATATGTTTCACCTGAGTACGCAAGCACGGGAATGCTTAACGAGTGCAGTGACGTTTATAGCTTCGGGATTCTACTAATGGAGATAATTACAGGAAGAAGTCCCATTGATTATTCCAGACCACCTGCAGAGATGAACTTGGTTGATTGGTTTAAGGGAATGGTAACAAGTCGTCGTGGCGATGAGCTAGTGGATCCGTTGATTGAGACTAAACCCCCATCAAGATCTCTGAAGAGAGCTTTGCTGGTTTGTTTGCGCTGTATAGACTTGGATGTCGTTAAGAGACCGAAGATGGGTCAAATTGTTCATATGCTTGAAGCTGATGATTTTCCATTTCGTTCTGAGGTTCATACATATAGAGAGAAAGATCCTTCTCCTTCTCATAAGACGGTTGCTTATCCAACAAGGCAGGTGGAGTCTGTACATAAACCAAGCTGGAGGAGATGA 1224 0.4567 MRVKHSSGTIPLVSKEIVEVNALDLKMEEEVEDVDPDRKKKEKQQKKEKEECEIKIVEGIEGSEEEVSVECSPNIGWGRWYSMSEVEEATDGLAEGNVIGEGGYGIVYRGVLRDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVRLLGYCAQGAKRMLVYEYVDNGTLEQWLHGDVGPVSPLTWDIRMKIAVGTAKGLAYLHEGLEPKVVHRDVKSSNILLDKNWNAKVSDFGLAKLLGSEKSYVTTRVMGTFGYVSPEYASTGMLNECSDVYSFGILLMEIITGRSPIDYSRPPAEMNLVDWFKGMVTSRRGDELVDPLIETKPPSRSLKRALLVCLRCIDLDVVKRPKMGQIVHMLEADDFPFRSEVHTYREKDPSPSHKTVAYPTRQVESVHKPSWRR 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181248g00042 407 ProSitePatterns Protein kinases ATP-binding region signature. 99 121 IPR017441 GO:0005524
Stsc181248g00042 407 MobiDBLite consensus disorder prediction 28 49 - -
Stsc181248g00042 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Stsc181248g00042 407 Gene3D Phosphorylase Kinase; domain 1 63 168 - -
Stsc181248g00042 407 FunFam Putative receptor-like serine/threonine-protein kinase 169 379 - -
Stsc181248g00042 407 ProSiteProfiles Protein kinase domain profile. 93 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181248g00042 407 Gene3D Transferase(Phosphotransferase) domain 1 169 377 - -
Stsc181248g00042 407 Pfam Protein tyrosine and serine/threonine kinase 96 364 IPR001245 GO:0004672|GO:0006468
Stsc181248g00042 407 SUPERFAMILY Protein kinase-like (PK-like) 76 378 IPR011009 -
Stsc181248g00042 407 MobiDBLite consensus disorder prediction 377 407 - -
Stsc181248g00042 407 PIRSF TyrPK_CSF1-R 43 185 - -
Stsc181248g00042 407 PIRSF TyrPK_CSF1-R 22 90 - -
Stsc181248g00042 407 PIRSF TyrPK_CSF1-R 185 387 - -
Stsc181248g00042 407 PANTHER OS01G0323000 PROTEIN 9 382 - -
Stsc181248g00042 407 FunFam Probable serine/threonine-protein kinase At1g01540 73 168 - -
Stsc181248g00042 407 CDD STKc_IRAK 99 365 - -
Stsc181248g00042 407 SMART serkin_6 93 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181248g00042 Stsc-Chr181248 182658 186432 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181248g00042 73 365 Receptor kinase-like Gene Family AT4G02010 47.138 5.43e-93 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Stsc181248g00042 Pkinase 3.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181248g00042 - - gmx:100305439 634.024