Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181248g00037 ATGTCTTCCGACGATTCCCTCTTTTCTGATTTATTATCTTCTTCCTCTCCTCCACCTCCCGATGACGATTCTTCTGATACCTCTTCGCCTTCACCTCCGCCTCCCAAACAAGACTCCTCTTCCTCTCCCCCGCCTTCCTCACCTCCACCTCCCCCTCCTCCGCCCGATGATGATGATTCCTCGTCCCCTCCGCCACCACCACCCAAAGAAGACGATTCCTCTTCCTCATCTTCACCTCCTCCTCCACCCAGAGAATCAACAGAAGAAAGCAAAGTACCATCGGCGTGGGACGATGTTTTTTCTCCTCCGCCGCCGCCACCTTCACGTAGTCGATTAGGTCCGTCAGGCAGGACAGGGCGTGGAGATAACAATGAACCAAACTCGAAGGAGGAGAACAATGGGCCGCTGAGCAAGACGGCTATAATAGGAATCGCATCTGCAAGTGGTTTCTTGCTTCTTGTGATGATACTCTTCTTTGTGGTACGTGCAAGAAGAAAGAAAAGAGATGACGCCCCCATTCGTTACTTCACTAATACCCAACCTAGCGGAGGAGGTGGTCCGGGCGGATTCAATCGTGATGGTGACCATACTATGAATATACCTCCACCACCAGGTGCAGCGTGGGGAACACAAGGATCAGCACCACCATCAGGAGGCGGAGCATCTTGGGGAATGAATCCCCAGCAGCAGCCATACAGCGGAAGCATGTTGAGCAGCTCAAGTGGTTACTCTGGTGGTTCCCAACGTTCAGTGTATCCACCACCACACCCTTCAGTAGCTCTAGGATTCAGCCAGAGCACCTTCACCTTGGAGGAGTTATCCGTTGCCACCGGGGGCTTTTCGCAGGAAAACCTGTTGGGTCAAGGTGGGTTTGGATTTGTGCACAAAGGTGTCCTCCCCAGTGGTAAGGAAGTTGCAGTAAAGAGCCTCAAAGCCACGGATGCTCAAGGAGATAGAGAGTTCCAAGCTGAGGTTGAGACTATTAGCCGTGTCCATCATCGCCATCTTGTCTCACTTGTTGGCTACTCCCTTTCCGAACAGAGGAAGATCCTGGTCTATGAATTTGTTCCTAACAAAACTCTTGAATCCCATCTTCATGGAAAAGGTCGACCTGTCATGGATTGGCCAATCAGGCTTAAAATCGCCAAAGGAGCAGCCAAGGGACTTGCTTACTTGCATGAGGATTGTCATCCTCGTATAATTCATAGAGACATAAAGACCGCCAACATTCTGCTTGAAAATAACTTTGATGCCAAAGTGGCAGATTTTGGATTGGCAAAGTTCACTCAAGACACTAACACTCATGTTTCAACTCGTGTGATGGGAACATTCGGGTATTTGGCTCCTGAGTATGCATCAAGTGGCAAGCTAACTGAGAAGTCTGATGTCTTCTCCTTTGGTGTTATGCTTCTAGAGCTGATTTCAGGACGACCCCCACTGGACCACTCCGGTGATTATGAAGAGGATAGTTTGGTTGATTGGGCTAGACCACTCTGTACAAAAGCAGTGGAAACTGGAGAATTCACAGGGCTGGTGGATGCACGTTTAGAGGACAATTATGACAAGCAAGAAATGAAAAACATGGTGGCTTGCGCCGGGGCGAGTGTTAGGCACTCAGCAAGGAGGCGGCCAAAAATGAGCCAGATTGTAAGAGTGTTGGAGGGAGATGTGTCACTAGATGTGCTTAATAACGAAGGAGTGAAACCGGGGCAAAGTGGTGTGATGGGTGAAAGTGGAGAATATGGTTCTGCAGCATACAGTGCAGACATGAAGAGGTTCAGGATGTTAGCATTGGGGGAAAGTAGTGGAGTTGCATCCAGTGATTATGGTGGCACCACCAGTGAATATGGGCTCAATGCATCTCCTTCGAGCAGTGACACATCATCATCCACTGAATATGCAAAGAGGGGATGA 1914 0.4953 MSSDDSLFSDLLSSSSPPPPDDDSSDTSSPSPPPPKQDSSSSPPPSSPPPPPPPPDDDDSSSPPPPPPKEDDSSSSSSPPPPPRESTEESKVPSAWDDVFSPPPPPPSRSRLGPSGRTGRGDNNEPNSKEENNGPLSKTAIIGIASASGFLLLVMILFFVVRARRKKRDDAPIRYFTNTQPSGGGGPGGFNRDGDHTMNIPPPPGAAWGTQGSAPPSGGGASWGMNPQQQPYSGSMLSSSSGYSGGSQRSVYPPPHPSVALGFSQSTFTLEELSVATGGFSQENLLGQGGFGFVHKGVLPSGKEVAVKSLKATDAQGDREFQAEVETISRVHHRHLVSLVGYSLSEQRKILVYEFVPNKTLESHLHGKGRPVMDWPIRLKIAKGAAKGLAYLHEDCHPRIIHRDIKTANILLENNFDAKVADFGLAKFTQDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELISGRPPLDHSGDYEEDSLVDWARPLCTKAVETGEFTGLVDARLEDNYDKQEMKNMVACAGASVRHSARRRPKMSQIVRVLEGDVSLDVLNNEGVKPGQSGVMGESGEYGSAAYSADMKRFRMLALGESSGVASSDYGGTTSEYGLNASPSSSDTSSSTEYAKRG 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181248g00037 637 MobiDBLite consensus disorder prediction 602 637 - -
Stsc181248g00037 637 CDD STKc_IRAK 286 555 - -
Stsc181248g00037 637 SMART serkin_6 280 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181248g00037 637 ProSitePatterns Protein kinases ATP-binding region signature. 286 308 IPR017441 GO:0005524
Stsc181248g00037 637 ProSiteProfiles Protein kinase domain profile. 280 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181248g00037 637 Pfam Protein kinase domain 281 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181248g00037 637 Gene3D Phosphorylase Kinase; domain 1 256 355 - -
Stsc181248g00037 637 Gene3D Transferase(Phosphotransferase) domain 1 356 564 - -
Stsc181248g00037 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 400 412 IPR008271 GO:0004672|GO:0006468
Stsc181248g00037 637 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 256 355 - -
Stsc181248g00037 637 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 149 596 IPR047117 -
Stsc181248g00037 637 SUPERFAMILY Protein kinase-like (PK-like) 258 553 IPR011009 -
Stsc181248g00037 637 FunFam Proline-rich receptor-like protein kinase PERK1 356 564 - -
Stsc181248g00037 637 MobiDBLite consensus disorder prediction 605 631 - -
Stsc181248g00037 637 MobiDBLite consensus disorder prediction 222 248 - -
Stsc181248g00037 637 MobiDBLite consensus disorder prediction 23 87 - -
Stsc181248g00037 637 MobiDBLite consensus disorder prediction 1 22 - -
Stsc181248g00037 637 MobiDBLite consensus disorder prediction 1 135 - -
Stsc181248g00037 637 MobiDBLite consensus disorder prediction 174 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181248g00037 Stsc-Chr181248 160546 162938 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181248g00037 92 632 Trihelix Transcription Factor Family AT1G70460 48.452 1.27e-153 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc181248g00037 Pkinase 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181248g00037 - - psat:127085055 654.825