Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181248g00026 ATGGACGCTCATCACGACAACGATTCCGATATGCTCCCCAACCACCATTCACAAAACGATCAGAATGCGGATTCCAACTCCCCTCCTCACCTCCAACACGATCACCAAAGTGATGACAACACCAATGCCAATTCTCCTCTTCTTCCTCTGCCAGAGGCCAACGCGCGCCACGATCCTAAACTCCATTCGCACCATGAATTGCTCACTCCCAAGCCTAAAGAGAGGAACGTTAGGGAAATGAAGAACGTCCTCAATGATACCGAGATGACTGATTATGACGACTCCGGTTCGTGCTCCGAGCGAGAAGCATTTATGAGAGAGCTGGAAAGTTTCTACAGAGAGAGGTCCTTGGAGTTCAAGCCTCCTAAGTTTTATGGAGAGCCACTTAATTGCCTCAAGTTATGGAGAGCTGTCATCAAACTTGGTGGCTATGATGTGGTAACTGGGAATAAGTTGTGGCGGCAAGTCGGAGAGTCTTTCCACCCACCCAAGACTTGCACTACAGTCTCATGGACGTTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGTATAAGAGAGAAATTGGGGAGCTGCAGCTCCCTGTTGGATCATTTCATCAATCTTCAAGTGTGGAAAAAGAGACTTCTGTTTACCATGCTTCGGGCTCTGGCTCTGGGAGGGCACGAAGGGATGCGGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATATGGTGAGGTTGCTGAGCCAGTTATTAAGGATAAGAACTCCAGCACTACTCCAAAACGTGAAAAGAACCTCAAAAGTATTGGTATGCTTAATAAACACAGGACGCCATCTGTTCTTGAGCATGCTGAGAAAGCTGCAAATATTGATGGAAATAGACAATTGGTCACAGCAGTTGTGGATGTTGGACCCCCAGCAGACTGGGTGAAGGTCAATGTGCGAGAAACTAAGGATTGTTTTGAGGTGTATGTACTTGTTCCTGGACTCCTTCGCGAGGAGGTGCGAGTCCAATCAGATCCAGTTGGCCGTCTTGTTATAACTGGTCTCCCCGAACATGTTAACAATCCATGGGGAATTACCCCTTTCAAAAAGGTTGTGAACTTACCTGCAAGAATTGATCCGCTTCAGACATCTGCTGTCGTTAGTTTGCATGGTCGACTGTATGTACGCGTTCCCTTTGAGCAAGGAGCTGTGTAA 1203 0.4722 MDAHHDNDSDMLPNHHSQNDQNADSNSPPHLQHDHQSDDNTNANSPLLPLPEANARHDPKLHSHHELLTPKPKERNVREMKNVLNDTEMTDYDDSGSCSEREAFMRELESFYRERSLEFKPPKFYGEPLNCLKLWRAVIKLGGYDVVTGNKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKYKREIGELQLPVGSFHQSSSVEKETSVYHASGSGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKNSSTTPKREKNLKSIGMLNKHRTPSVLEHAEKAANIDGNRQLVTAVVDVGPPADWVKVNVRETKDCFEVYVLVPGLLREEVRVQSDPVGRLVITGLPEHVNNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLYVRVPFEQGAV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181248g00026 400 CDD ACD_sHsps_p23-like 315 394 - -
Stsc181248g00026 400 Pfam Hsp20/alpha crystallin family 315 396 IPR002068 -
Stsc181248g00026 400 Gene3D - 98 196 IPR036431 GO:0003677
Stsc181248g00026 400 SUPERFAMILY HSP20-like chaperones 308 395 IPR008978 -
Stsc181248g00026 400 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 299 400 IPR002068 -
Stsc181248g00026 400 FunFam AT-rich interactive domain-containing protein 3 98 197 - -
Stsc181248g00026 400 MobiDBLite consensus disorder prediction 14 30 - -
Stsc181248g00026 400 ProSiteProfiles ARID domain profile. 98 189 IPR001606 GO:0003677
Stsc181248g00026 400 SMART ARID_2 95 185 - -
Stsc181248g00026 400 SMART bright_3 99 190 IPR001606 GO:0003677
Stsc181248g00026 400 Pfam ARID/BRIGHT DNA binding domain 100 185 IPR001606 GO:0003677
Stsc181248g00026 400 Gene3D - 297 399 IPR008978 -
Stsc181248g00026 400 FunFam AT-rich interactive domain-containing protein 3 291 399 - -
Stsc181248g00026 400 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 17 397 IPR045147 GO:0006357
Stsc181248g00026 400 CDD ARID 100 185 - -
Stsc181248g00026 400 MobiDBLite consensus disorder prediction 1 57 - -
Stsc181248g00026 400 SUPERFAMILY ARID-like 94 196 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181248g00026 Stsc-Chr181248 114418 119334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181248g00026 69 397 ARID Transcription Factor Family AT1G76510 66.066 1.31e-150 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc181248g00026 ARID 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181248g00026 - - adu:107461292 701.819