Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc181248g00026 | ATGGACGCTCATCACGACAACGATTCCGATATGCTCCCCAACCACCATTCACAAAACGATCAGAATGCGGATTCCAACTCCCCTCCTCACCTCCAACACGATCACCAAAGTGATGACAACACCAATGCCAATTCTCCTCTTCTTCCTCTGCCAGAGGCCAACGCGCGCCACGATCCTAAACTCCATTCGCACCATGAATTGCTCACTCCCAAGCCTAAAGAGAGGAACGTTAGGGAAATGAAGAACGTCCTCAATGATACCGAGATGACTGATTATGACGACTCCGGTTCGTGCTCCGAGCGAGAAGCATTTATGAGAGAGCTGGAAAGTTTCTACAGAGAGAGGTCCTTGGAGTTCAAGCCTCCTAAGTTTTATGGAGAGCCACTTAATTGCCTCAAGTTATGGAGAGCTGTCATCAAACTTGGTGGCTATGATGTGGTAACTGGGAATAAGTTGTGGCGGCAAGTCGGAGAGTCTTTCCACCCACCCAAGACTTGCACTACAGTCTCATGGACGTTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGTATAAGAGAGAAATTGGGGAGCTGCAGCTCCCTGTTGGATCATTTCATCAATCTTCAAGTGTGGAAAAAGAGACTTCTGTTTACCATGCTTCGGGCTCTGGCTCTGGGAGGGCACGAAGGGATGCGGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATATGGTGAGGTTGCTGAGCCAGTTATTAAGGATAAGAACTCCAGCACTACTCCAAAACGTGAAAAGAACCTCAAAAGTATTGGTATGCTTAATAAACACAGGACGCCATCTGTTCTTGAGCATGCTGAGAAAGCTGCAAATATTGATGGAAATAGACAATTGGTCACAGCAGTTGTGGATGTTGGACCCCCAGCAGACTGGGTGAAGGTCAATGTGCGAGAAACTAAGGATTGTTTTGAGGTGTATGTACTTGTTCCTGGACTCCTTCGCGAGGAGGTGCGAGTCCAATCAGATCCAGTTGGCCGTCTTGTTATAACTGGTCTCCCCGAACATGTTAACAATCCATGGGGAATTACCCCTTTCAAAAAGGTTGTGAACTTACCTGCAAGAATTGATCCGCTTCAGACATCTGCTGTCGTTAGTTTGCATGGTCGACTGTATGTACGCGTTCCCTTTGAGCAAGGAGCTGTGTAA | 1203 | 0.4722 | MDAHHDNDSDMLPNHHSQNDQNADSNSPPHLQHDHQSDDNTNANSPLLPLPEANARHDPKLHSHHELLTPKPKERNVREMKNVLNDTEMTDYDDSGSCSEREAFMRELESFYRERSLEFKPPKFYGEPLNCLKLWRAVIKLGGYDVVTGNKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKYKREIGELQLPVGSFHQSSSVEKETSVYHASGSGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKNSSTTPKREKNLKSIGMLNKHRTPSVLEHAEKAANIDGNRQLVTAVVDVGPPADWVKVNVRETKDCFEVYVLVPGLLREEVRVQSDPVGRLVITGLPEHVNNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLYVRVPFEQGAV | 400 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc181248g00026 | 400 | CDD | ACD_sHsps_p23-like | 315 | 394 | - | - | |
Stsc181248g00026 | 400 | Pfam | Hsp20/alpha crystallin family | 315 | 396 | IPR002068 | - | |
Stsc181248g00026 | 400 | Gene3D | - | 98 | 196 | IPR036431 | GO:0003677 | |
Stsc181248g00026 | 400 | SUPERFAMILY | HSP20-like chaperones | 308 | 395 | IPR008978 | - | |
Stsc181248g00026 | 400 | ProSiteProfiles | Small heat shock protein (sHSP) domain profile. | 299 | 400 | IPR002068 | - | |
Stsc181248g00026 | 400 | FunFam | AT-rich interactive domain-containing protein 3 | 98 | 197 | - | - | |
Stsc181248g00026 | 400 | MobiDBLite | consensus disorder prediction | 14 | 30 | - | - | |
Stsc181248g00026 | 400 | ProSiteProfiles | ARID domain profile. | 98 | 189 | IPR001606 | GO:0003677 | |
Stsc181248g00026 | 400 | SMART | ARID_2 | 95 | 185 | - | - | |
Stsc181248g00026 | 400 | SMART | bright_3 | 99 | 190 | IPR001606 | GO:0003677 | |
Stsc181248g00026 | 400 | Pfam | ARID/BRIGHT DNA binding domain | 100 | 185 | IPR001606 | GO:0003677 | |
Stsc181248g00026 | 400 | Gene3D | - | 297 | 399 | IPR008978 | - | |
Stsc181248g00026 | 400 | FunFam | AT-rich interactive domain-containing protein 3 | 291 | 399 | - | - | |
Stsc181248g00026 | 400 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT | 17 | 397 | IPR045147 | GO:0006357 | |
Stsc181248g00026 | 400 | CDD | ARID | 100 | 185 | - | - | |
Stsc181248g00026 | 400 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
Stsc181248g00026 | 400 | SUPERFAMILY | ARID-like | 94 | 196 | IPR036431 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc181248g00026 | Stsc-Chr181248 | 114418 | 119334 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc181248g00026 | 69 | 397 | ARID Transcription Factor Family | AT1G76510 | 66.066 | 1.31e-150 | 431 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | ARID | Stsc181248g00026 | ARID | 1.9e-17 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc181248g00026 | - | - | adu:107461292 | 701.819 |