Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181248g00025 ATGGCAGTGATGAGGGGAACAGATAATAACTTCAATTTAGGGCACCTTTTCAATCTCCACCTTCAAACTCCTCCTGATAACAACAACCACCCCCTTTTCAACTCTCCTCCTCCACCTCCTCCTCCTCCTGAAGCTGACGGTGGAGCTTCAAGCGGAGGAACATCATCAGCTGAACCCTCCAGTGCCCGCCGTCCAAGGGGCAGACCAGCTGGATCCAAGAACAAGCCCAAACCACCAATCCTAGTCACAAGGGACACTCCCAATGCACTCCGCTGCCACGTTCTTGAGGTCTCCGCCGGCTCGGAGATCCTCGAAACACTCTCCACCTACGCTCGCCGCAGGGGGAGAGGCCTTTGCATCCTCAGCGCCACTGGCACCCTCTCCAACGTTACTCTTCGCCAGCCTGGAGGCTCCGTCCTCACTCTTCACGGAACCTTCGAGATCCTCACTATCTCCGGGACGATTCTTCCCCCGCCTGCTCCACCGGGATCCGGTGGGCTTTCTGTGTACCTGTCCGGCGGGCAGGGGCAGGTGGTTGGTGGCAACGTGGTGGCCCCTCTTGTGGCTTCAGCCGTGGTGGTTCTGATGGCTGCATCCTTTGCAAATGCTATGTTTGAGAGATTGCCGTTGAGTTTGGACGATGATGATCCTCGTGAGGACGATGACCACTTCAATCAGCAGCGACAACAACCTGCAGCATCTCAATCTTCTGCCGTAACTGGCCAGCTCGGCGAACAGGCCAGCAGCGGCGGCCGCGCTGTCTCTTTCTTTAATTTGGCAGCAGGTGGTGGTGGTGGTGGTGGAGGAAGGGGCATGAACGGCATCAGGAGTGGCTATCCGTTGTCGGTTCCCTGCGGCGGTGATCTATTTGGATTGGGTGGCGGTGGTGGCGGTGCAGGTGCAAGTGCAGCAGCGGAGATCAAGCCTCCGCCGTTCTAG 939 0.5793 MAVMRGTDNNFNLGHLFNLHLQTPPDNNNHPLFNSPPPPPPPPEADGGASSGGTSSAEPSSARRPRGRPAGSKNKPKPPILVTRDTPNALRCHVLEVSAGSEILETLSTYARRRGRGLCILSATGTLSNVTLRQPGGSVLTLHGTFEILTISGTILPPPAPPGSGGLSVYLSGGQGQVVGGNVVAPLVASAVVVLMAASFANAMFERLPLSLDDDDPREDDDHFNQQRQQPAASQSSAVTGQLGEQASSGGRAVSFFNLAAGGGGGGGGRGMNGIRSGYPLSVPCGGDLFGLGGGGGGAGASAAAEIKPPPF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181248g00025 312 MobiDBLite consensus disorder prediction 227 245 - -
Stsc181248g00025 312 MobiDBLite consensus disorder prediction 211 245 - -
Stsc181248g00025 312 ProSiteProfiles PPC domain profile profile. 87 227 IPR005175 -
Stsc181248g00025 312 SUPERFAMILY AF0104/ALDC/Ptd012-like 88 210 - -
Stsc181248g00025 312 Pfam Plants and Prokaryotes Conserved (PCC) domain 91 201 IPR005175 -
Stsc181248g00025 312 Gene3D - 90 213 - -
Stsc181248g00025 312 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 54 245 IPR014476 GO:0003680
Stsc181248g00025 312 MobiDBLite consensus disorder prediction 18 85 - -
Stsc181248g00025 312 MobiDBLite consensus disorder prediction 30 46 - -
Stsc181248g00025 312 CDD DUF296 91 156 IPR005175 -
Stsc181248g00025 312 FunFam AT-hook motif nuclear-localized protein 90 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181248g00025 Stsc-Chr181248 103842 105206 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181248g00025 44 210 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 63.483 1.06e-63 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181248g00025 - - aip:107609871 342.813