Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181248g00021 ATGTCGGGATCGGAGATGGCAAGCAGAGAAGGCTTCACCGTTGGTCTTCACAACCATAACAACATGCGTTTGGACTTTGCTGATGGCACTGCTCTCTTCACCACCACCAACAACAGCAACCCTCTCGCGCCGCCTTCTGCTTCTCCAACTTACCACCCTTCCACCGCAGTCACCGCCGCTCCTATCAACATCAATGGCGGCGCTGTTGGCGCCGTCGAATCGTCGGCGTTGATGCCACTTGGTGGCCACCTCGGGAGCAGCTCTGAGCAGAAGAAGAAGAGAGGAAGGCCAAGGAAATACGTACCCGATGCCGGCGCTGTAGGGTTAGGGTTGAACCCTGATTCTTCTCCTCCTGGTGTAACCGTTAACCATAGCCAGAACCAGAATCAGAATCAGTCCGGTGGAGGAGCTTTATCGCCAGGAATTGGTTCCGCCATGCCGAATTCTCTTTCCGGGAAGAAAAGGGGAAGACCTCGTGGCTCTCGCAACAAGCATCGTCACTTAAAGGGTCATGGATTGGCAAAACTTTCTTTCACACCACATGTTCTTACTGTGAAAGCTGGAGAGGATCTTGCAGTAAAGGTTACGTCAATCTCCATGGATGGTCCAAGAAATATTTGTATCTTAACAGCAAATGGAACCATATCTAATGTCACTCTCAGCCAACCTTCAATACCTGGAGGAACTGTTACTTATGAGGGACGATTTGAGATCCTGGCACTCTGTGGTTCTTTTCTTCTTTCTGAAAATGGTCAGTTCCAAAGAACTGGTTCTTTAAGTCTGACCTTGTCTGGGCCTGATGGCCGGGTTATGGGTGGTGCAATTGCAGGTGTTTGTGTAGCTGCTTCCCCAATTCAGATAGTTTTCGCAAGCTTCCTTGTAGATGGTTACAAGAAACAACTGAAGTCAACGAACCAGATGGGGAACTTATCTGCCCCACCTAACGTTCTGTCAGCAGGTCAAAGCAGCTCCCCATCGCATGGTACTCTTAGTGAATCTTCTGGTGGAGCTGGGAGCCCACTTAACCTGAGTACAGAGGTTTGCAATAACAATAACACCCCACAAGGAATTTCTGGAATGCCGTGGAAATGA 1092 0.4954 MSGSEMASREGFTVGLHNHNNMRLDFADGTALFTTTNNSNPLAPPSASPTYHPSTAVTAAPININGGAVGAVESSALMPLGGHLGSSSEQKKKRGRPRKYVPDAGAVGLGLNPDSSPPGVTVNHSQNQNQNQSGGGALSPGIGSAMPNSLSGKKRGRPRGSRNKHRHLKGHGLAKLSFTPHVLTVKAGEDLAVKVTSISMDGPRNICILTANGTISNVTLSQPSIPGGTVTYEGRFEILALCGSFLLSENGQFQRTGSLSLTLSGPDGRVMGGAIAGVCVAASPIQIVFASFLVDGYKKQLKSTNQMGNLSAPPNVLSAGQSSSPSHGTLSESSGGAGSPLNLSTEVCNNNNTPQGISGMPWK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181248g00021 363 ProSiteProfiles PPC domain profile profile. 174 315 IPR005175 -
Stsc181248g00021 363 SUPERFAMILY AF0104/ALDC/Ptd012-like 177 300 - -
Stsc181248g00021 363 MobiDBLite consensus disorder prediction 80 167 - -
Stsc181248g00021 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 48 345 IPR039605 GO:0003680
Stsc181248g00021 363 MobiDBLite consensus disorder prediction 308 363 - -
Stsc181248g00021 363 CDD DUF296 179 292 IPR005175 -
Stsc181248g00021 363 SMART AT_hook_2 152 164 IPR017956 GO:0003677
Stsc181248g00021 363 SMART AT_hook_2 91 103 IPR017956 GO:0003677
Stsc181248g00021 363 MobiDBLite consensus disorder prediction 116 138 - -
Stsc181248g00021 363 Gene3D - 180 312 - -
Stsc181248g00021 363 Pfam Plants and Prokaryotes Conserved (PCC) domain 180 292 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181248g00021 Stsc-Chr181248 82236 85722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181248g00021 1 363 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 44.275 5.79e-76 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181248g00021 - - ahf:112705741 591.652