Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181248g00019 ATGGAAGAAATAGCAAGTGAGATGAGTGAACATGAAAAGAGAAACGGTGAAGGAGGTCTGCCACCAGGTTTCAGGTTCCACCCAACTGATCAAGAACTCATAACCTTCTATTTGGCTTCCAAGGTGTTCAACAATAATAGTTGTAATACTCATAATCTAAACTTTGTGGAGGTTGATCTGAATCGATGTGAGCCATGGGAGCTTCCAGAAGTGGCAAAGATGGGTGAGAGAGAGTGGTATCTGTACAGTGTGAGAGACAGGAAGTACCCAACAGGCCTCAGAACTAACAGAGCAACTGCTGCTGGATACTGGAAGGCCACCGGCAAGGACAAGCAAGTCTACGGCGGTGGTAGTGGTGGTGGTGGGGTTGTTGGGATGAAGAAGACACTTGTGTTCTACAAAGGGAGGGCCCCACGTGGTCAGAAGACGAAATGGGTAATGCATGAGTTCCGGTTGGACCCTCACACCTCTCCTCCTTCTTCCCTCTCAAAGGATGAGTGGGTGATATGCAGAATATTTCATAAAACTGGAGAAAAGAGAACTGCTACTACTACTCCATTTCTACAGCAGCAGCAGCAGGATCATCCCTTATTATTCCAAACCCCATCATCATCACTTGTTAATCTCCATAACACCCACCACTCTCATAATCATAATCTTTTCCCACCATTACTTCATCCTGCAGCAGAAGCCACCAAAAACAGATCATCATCATCATCAATAATGAACAACCATAATATCTATCCACCACCACCACCACCACCACCTTCCTCCCAAAACATGCTGAAGCTCAACAAGTCTACTAAATTAACAAAAACACAGCCTTCTCCCACATCATCACTCTTCCCATACCAGCAACATCAGCAGCTTCCAGATGATCCCAACTTATTATTATTGCATTGGATAGAGAGTAGTAATAATAATAACTGTAACCAGATAATGGATGCTGCTGCTGCTGGGTTGATCGGACCTTCACCAACTACTACTGCTAATGCTGAAATAATAAGGGACATCATCATGTCTTCTTCTCCGGCTTCCATGCTGCTCAACGATGGCCTACAATCTTGGCTTCATCATCACCATCTCTAA 1089 0.4463 MEEIASEMSEHEKRNGEGGLPPGFRFHPTDQELITFYLASKVFNNNSCNTHNLNFVEVDLNRCEPWELPEVAKMGEREWYLYSVRDRKYPTGLRTNRATAAGYWKATGKDKQVYGGGSGGGGVVGMKKTLVFYKGRAPRGQKTKWVMHEFRLDPHTSPPSSLSKDEWVICRIFHKTGEKRTATTTPFLQQQQQDHPLLFQTPSSSLVNLHNTHHSHNHNLFPPLLHPAAEATKNRSSSSSIMNNHNIYPPPPPPPPSSQNMLKLNKSTKLTKTQPSPTSSLFPYQQHQQLPDDPNLLLLHWIESSNNNNCNQIMDAAAAGLIGPSPTTTANAEIIRDIIMSSSPASMLLNDGLQSWLHHHHL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181248g00019 362 SUPERFAMILY NAC domain 17 175 IPR036093 GO:0003677|GO:0006355
Stsc181248g00019 362 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 257 - -
Stsc181248g00019 362 MobiDBLite consensus disorder prediction 230 262 - -
Stsc181248g00019 362 MobiDBLite consensus disorder prediction 268 287 - -
Stsc181248g00019 362 MobiDBLite consensus disorder prediction 1 18 - -
Stsc181248g00019 362 FunFam NAC domain-containing protein 100-like 29 179 - -
Stsc181248g00019 362 MobiDBLite consensus disorder prediction 1 23 - -
Stsc181248g00019 362 ProSiteProfiles NAC domain profile. 20 175 IPR003441 GO:0003677|GO:0006355
Stsc181248g00019 362 MobiDBLite consensus disorder prediction 231 245 - -
Stsc181248g00019 362 Pfam No apical meristem (NAM) protein 21 152 IPR003441 GO:0003677|GO:0006355
Stsc181248g00019 362 Gene3D NAC domain 29 179 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181248g00019 Stsc-Chr181248 74973 76257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181248g00019 1 182 NAC Transcription Factor Family AT1G76420 68.132 1.95e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc181248g00019 NAM 3.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181248g00019 - - aip:107607453 444.121