Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181248g00015 ATGACTCGTCCCTTGAGAATTCTTGGCGAGAGCAACTCGTCAACCGCCGACAACGCTCCCTCCGTCGTCGACTCCGATTTCGTCGTCATCCTCGCCGCTCTCATCTGCGCTCTCATCTGTGTACTCGGCCTCGTTGCTGTAGCTCGCTGCGCTTGTCTCCGCCGCCTCCGCCTCTCATCCTCCTCCTCCGCCGCCGCTACTCCCTCGCCTCCAGCAGCTGCTAACAAAGGTGTCAAGAAGAAGGTACTCAGCTCTCTTCCCAAGGTCACCGCCACAGTCGAATCCGCCGGCAAATTCTCCGACTGCGCCATCTGCCTCGCGGAGTTCGCCGCCGGAGACGAGATCCGAGTGCTACCTCAGTGCGGCCACGGCTTCCACGTGTCGTGCATCGACGAGTGGCTGAGGTCTCATTCGTCTTGTCCGTCGTGCCGTCAGATTCTGGTGGTTCCGAGATGCAACAAGTGCGGTGGTTTCCCAGCACCGGCGAGCTCGAGCACCACCGCCACCGTCCCTCAGCCACCGGAATCTGAATCCACAATCAAAGTAAGCAGCGATCATGGCAATAGCAATAGGTTCTTACCTTAA 585 0.5932 MTRPLRILGESNSSTADNAPSVVDSDFVVILAALICALICVLGLVAVARCACLRRLRLSSSSSAAATPSPPAAANKGVKKKVLSSLPKVTATVESAGKFSDCAICLAEFAAGDEIRVLPQCGHGFHVSCIDEWLRSHSSCPSCRQILVVPRCNKCGGFPAPASSSTTATVPQPPESESTIKVSSDHGNSNRFLP 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181248g00015 194 MobiDBLite consensus disorder prediction 161 194 - -
Stsc181248g00015 194 SMART ring_2 102 143 IPR001841 -
Stsc181248g00015 194 Pfam Ring finger domain 101 144 IPR001841 -
Stsc181248g00015 194 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Stsc181248g00015 194 CDD RING-H2_EL5-like 101 144 - -
Stsc181248g00015 194 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 18 156 - -
Stsc181248g00015 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 148 IPR013083 -
Stsc181248g00015 194 SUPERFAMILY RING/U-box 95 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181248g00015 Stsc-Chr181248 57076 58162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181248g00015 1 155 C3H Transcription Factor Family AT1G20823 66.463 2.89e-66 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181248g00015 - - pvu:PHAVU_009G007400g 230.335