Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181248g00006 ATGAATTTGTTTTTGATTCTTTGCCCGGTGTTGGTGTTGTTGTTATCATTCCCCTTTTTGGGAGTATCTGCTGCTGCAAATGTCTCGGCTTCAAGACCCGCCGTGGCGAACATTGGGGCAATCTTCACCTTCAATTCCACAATTGGGAGGGTGGCTAAAATTGCCATGGAGCAAGCTGTGAAGGATGTCAATGCCAACACCAGCATCCTTCATGGAACCAAACTTGTCCTCCACATGCAAGATTCCAATTGTAGTGGTTTCTTGGGCATGATTCAATCTTTGCGGTTCATGGAGACTGATGTAGCTGCTATAATAGGTCCCCAATCTTCTGTTGTAGCTCACATCATATCCCATGTTGCGAATGAGCTTCGAGTTCCTCTGGTGTCGTTTGCAGCCACAGATCCTACACTTACCTCCCTGCAGTTTCCATTCTTTGTGAGGACAACACAGAGTGATATGTACCAAATGACTGCGGTTGCGGAGATCATAGACTATTATGGTTGGAAGGAGGTGATTGCCATCTATATAGATGATGATTACGGACGAAATGGTGTTTCTGTGTTGGATGATCAGCTGGCTTCTAGGCGCTGCAAAATATCCTACAAGGCTGCAATAAAATCTGGACCGATCGACAGGGCTGATATCACGAATTTGCTTGTGCAAGTGGCTCTAATGCAATCTCGGATCATTGTTCTTCATACAAATCCTGATTCTGGATTTATGGTCTTCAATGTGGCACATTATCTTGGGATGACAACCAATGGTTATGTCTGGATAGCCACGGATTGGCTCTCGTCTGTCTTGGATTCTACTACTCTACCTTCAGAAACAATGGATATTCTTCAAGGAGTACTTGTTTTGCGCCAACATACGCCTGATTCTGATAGAAAGAAAGCATTTAGCTCATGGTGGAAGAAGTTTACTGGCGGCTCTTTGGGGTTACATTCTTATGGCCTCTATGCTTATGATTCTGTCTTTCTGTTAGCGCATGCTCTCGATGCATTCTTTAGTCAGGGTGGGATTGTTTCCTGTACCAACTACACGAGTTTGCGCGATGATAAGCCTGGTGGTCTTAACCTTGATGCTATGAGCATTTTTGACAATGGAACACTTTTGTTGAAGAACATAGAGAGGATTGACTTTGTTGGATTAACGGGTCCTGTGAGATTCACATCAGACAGAAGCCTTGTTCGTCCTGCATATGATGTTGTCAATGTCATTGGAACTGGAGTTCACCGGGTTGGTTACTGGTCAAACTATTCTGGTCTCTCAATTGTGCCTCCAGAGACATTGTATACTAAGCCAGCTAATAAATCAAGTGCGAATCAGCACCTTCATAGTGTCATATGGCCTGGAGATACATTATCAAAACCACGCGGATGGGTTTTCCCAAATAATGGAAGGCAATTGAGAATTGGTGTGCCTATTCGGGTTGGTTTCCGCGAATTTGTTTCGCCGGTTCGAGGAACTGATATGTTTAAAGGCTTCAGTATTGATGTATTCACTGCAGCTGTGAACTTGTTACCTTATGCTGTTCCATACCGGTTTGTCCCATTTGGAAATGGTCACGAGAATCCAAGCTACACAGAGCTTGTCAACTTAATCACCACCGGTTACTTTGATGGTGCTGTTGGTGACATTGCCATCACCACGAATCGGACAAAGATCGTAGATTTCACACAGCCATATGCTGCATCTGGACTAGTTGTGGTGGCCCCTTTTAAGAAGATCAATTCTGGCGGATGGTCTTTCCTTCGGCCATTTACACCTCTTATGTGGACTGTGACTGCTTGTTTCTTCTTTTTCATTGGGATAGTTGTATGGATTCTAGAACACAGGATCAATGATGAGTTCAGAGGCCCACCAAAACAGCAATTTATAACAATTTTATGGTTTAGCCTTTCAACTCTCTTCTTTTCCCATAGAGAGAATACCATGAGCACTCTCGGCCGCTTGGTGGTTCTGATATGGTTGTTTGTGGTTTTGATCATAAACTCCAGCTACACTGCAAGTTTAACATCCATACTCACTGTGCAGCAGCTATCTTCCCCTATCAGTGGAATAGAAAGTTTAAAGAGTAGTGATGAAAACATAGGATTCCAAGTGGGTTCATTCGCAGAGAGCTATTTGGCCGAGGACATTGGGATACCCGAAAAGAGACTCGTTCGCCTAGGATCTCCAGAAGAATATGCTAAGGCACTCCAACTTGGTTCTAAGAATGGAGGTGTTGGTGCCATTGTTGATGAAAGACCATACGTCGAAATCTTCTTATCAACACAGTGCACATTCAAAATTGTAGGCCAGGAGTTCACCCGAAGTGGCTGGGGTTTTGCATTCCCTCGCGAGTCCCCGTTGGCTGTGGATTTGTCAACTGCTATTCTACAACTTTCCGAAACGGGGGATCTTCAGAGGATTCATGATAAGTGGATGACAAGAAGCAGCTGTTTAGATAATGCGGAGATCGATTCGGATAGGCTTCAGTTGAAAAGCTTCTGGGGATTGTTCCTCCTTTGTGGGATGGCTTGCTTCATAGCTCTTGTCATACATTTTGTTCAAATTATGGTGCGGATGCGGCATGCGCCTCCTCCTGAAGCTGCCTCTAATAGTAGCTCCATTTCTGGTCGTTTTCAAAGATTTCTGTCACTGATTGATGAGAAGGAAGAGTCACCAAGAAGTGAGAGAATAAAGAGGAATGGAGATGAAGGATCTTCTGATCATCAACTTAATGGGAGGCACCCAAAGAGGATACATTTTGATTTAACACCCAACTCAAACAGATAA 2781 0.4398 MNLFLILCPVLVLLLSFPFLGVSAAANVSASRPAVANIGAIFTFNSTIGRVAKIAMEQAVKDVNANTSILHGTKLVLHMQDSNCSGFLGMIQSLRFMETDVAAIIGPQSSVVAHIISHVANELRVPLVSFAATDPTLTSLQFPFFVRTTQSDMYQMTAVAEIIDYYGWKEVIAIYIDDDYGRNGVSVLDDQLASRRCKISYKAAIKSGPIDRADITNLLVQVALMQSRIIVLHTNPDSGFMVFNVAHYLGMTTNGYVWIATDWLSSVLDSTTLPSETMDILQGVLVLRQHTPDSDRKKAFSSWWKKFTGGSLGLHSYGLYAYDSVFLLAHALDAFFSQGGIVSCTNYTSLRDDKPGGLNLDAMSIFDNGTLLLKNIERIDFVGLTGPVRFTSDRSLVRPAYDVVNVIGTGVHRVGYWSNYSGLSIVPPETLYTKPANKSSANQHLHSVIWPGDTLSKPRGWVFPNNGRQLRIGVPIRVGFREFVSPVRGTDMFKGFSIDVFTAAVNLLPYAVPYRFVPFGNGHENPSYTELVNLITTGYFDGAVGDIAITTNRTKIVDFTQPYAASGLVVVAPFKKINSGGWSFLRPFTPLMWTVTACFFFFIGIVVWILEHRINDEFRGPPKQQFITILWFSLSTLFFSHRENTMSTLGRLVVLIWLFVVLIINSSYTASLTSILTVQQLSSPISGIESLKSSDENIGFQVGSFAESYLAEDIGIPEKRLVRLGSPEEYAKALQLGSKNGGVGAIVDERPYVEIFLSTQCTFKIVGQEFTRSGWGFAFPRESPLAVDLSTAILQLSETGDLQRIHDKWMTRSSCLDNAEIDSDRLQLKSFWGLFLLCGMACFIALVIHFVQIMVRMRHAPPPEAASNSSSISGRFQRFLSLIDEKEESPRSERIKRNGDEGSSDHQLNGRHPKRIHFDLTPNSNR 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181248g00006 926 MobiDBLite consensus disorder prediction 884 919 - -
Stsc181248g00006 926 Pfam Receptor family ligand binding region 53 408 IPR001828 -
Stsc181248g00006 926 MobiDBLite consensus disorder prediction 884 926 - -
Stsc181248g00006 926 Gene3D - 151 423 - -
Stsc181248g00006 926 FunFam Glutamate receptor 707 814 - -
Stsc181248g00006 926 Gene3D - 54 398 - -
Stsc181248g00006 926 PIRSF IGluLR_plant 5 921 IPR017103 -
Stsc181248g00006 926 Gene3D - 579 710 - -
Stsc181248g00006 926 FunFam Glutamate receptor 465 580 - -
Stsc181248g00006 926 Pfam Bacterial extracellular solute-binding proteins, family 3 478 811 IPR001638 -
Stsc181248g00006 926 FunFam Glutamate receptor 151 302 - -
Stsc181248g00006 926 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 872 IPR015683 -
Stsc181248g00006 926 SMART GluR_14 471 812 IPR001320 GO:0015276|GO:0016020
Stsc181248g00006 926 Gene3D - 745 772 - -
Stsc181248g00006 926 SUPERFAMILY Periplasmic binding protein-like II 446 812 - -
Stsc181248g00006 926 Gene3D - 773 809 - -
Stsc181248g00006 926 CDD GluR_Plant 468 809 - -
Stsc181248g00006 926 Pfam Ligand-gated ion channel 812 842 IPR001320 GO:0015276|GO:0016020
Stsc181248g00006 926 FunFam Glutamate receptor 581 711 - -
Stsc181248g00006 926 Gene3D - 465 578 - -
Stsc181248g00006 926 SUPERFAMILY Periplasmic binding protein-like I 31 462 IPR028082 -
Stsc181248g00006 926 Coils Coil 924 926 - -
Stsc181248g00006 926 CDD PBP1_GABAb_receptor_plant 37 427 IPR044440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181248g00006 Stsc-Chr181248 21281 24650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181248g00006 30 905 Ion Channels AT1G42540 64.792 0.0 1215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181248g00006 K05387 - gmx:100777478 1459.51