Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181248g00005 ATGATTTCTGGAGAGACTATGCATGAGGGAATGGACTTTCCTCATCAATTTACCATGCTAGAAAGCGAAAATGATAGAGGAAATGCATTGGTGATGGGAGATGAAAAATCAGGAGATTTGAGTAATGTAAGACAAATGGCAAGGGGCAAACCTCCGCGCCACCATGGCTCCGGCATGAGACATAGTGTTAGCACCACTAGATTGGTTGCTGCACCAGATCTGAGTTTGGATGTGGAGGTTACAGGGTGCAACTCATCTTCTGAAGACAACACAGAGTTTCTACCGATATTTCGGTCAGGAAGTTGTGCTGAAAGAGGACCAAAACAATATATGGAAGATGAACATATATGCATAGATGATCTTATTCAGCATCTAGGTTCATCTTCAAATGTTCCTTTTACAGGAGCTTTCTATGGGGTGTTTGATGGTCATGGAGGTACAGATGCAGCTTCATTTATAAGAAATAACATCCTTAGATTCATACTTGAGGACTCCCATTTTCCAACTTGCGTCGCAAAGGCAATCACAAGTGCTTTCCTGAAAGCTGATTATGCATTTGCAGATTCTAATTCGTTAGATATCTCTTCTGGAACCACTGCTTTGACAGCTCTTGTACATGGAAGGACCATGATAGTTGCCAATGCCGGGGACTGTAGAGCTGTACTAGGGAGGCGAGGTAGAGCAGTCGAGATGTCAACAGACCAGAAACCAAATTGTATTTCGGAGAGGCTAAGGATTGAGAGGCTTGGTGGAGTGGTATACGATGGATACTTGAACGGGCAGCTGTCGGTTTCTCGTGCTCTAGGAGACTGGCACATGAAAGGTCCCAAGGGCTCTGCATGCCCTTTGAGTGCGGAACCTGAGTTGCAAGAAATCAACCTGACTGAGGATGATGAGTTCTTGATAATGGGATGTGATGGGTTGTGGGACGTAATGAGTAACCAATGTGCTGTGACAATGGCAAGGAAAGAATTGATGATACACAATGATCCTGAAAGGTGTTCAAGAGAGCTGGTCAGAGAGGCGCTTAAGCGCAACTCTTGTGATAACTTAACAGTTATCGTGGTTTGTTTTTCACAAGACCCTCCTCCAAGAATAGAGACACCACCTTCTCGAGTAAGAAGGAGCATCTCTGCAGAAGGCCTCAATTTACTCAAGGGTGTATTGGACTCTTAG 1176 0.4447 MISGETMHEGMDFPHQFTMLESENDRGNALVMGDEKSGDLSNVRQMARGKPPRHHGSGMRHSVSTTRLVAAPDLSLDVEVTGCNSSSEDNTEFLPIFRSGSCAERGPKQYMEDEHICIDDLIQHLGSSSNVPFTGAFYGVFDGHGGTDAASFIRNNILRFILEDSHFPTCVAKAITSAFLKADYAFADSNSLDISSGTTALTALVHGRTMIVANAGDCRAVLGRRGRAVEMSTDQKPNCISERLRIERLGGVVYDGYLNGQLSVSRALGDWHMKGPKGSACPLSAEPELQEINLTEDDEFLIMGCDGLWDVMSNQCAVTMARKELMIHNDPERCSRELVREALKRNSCDNLTVIVVCFSQDPPPRIETPPSRVRRSISAEGLNLLKGVLDS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181248g00005 391 FunFam Probable protein phosphatase 2C 22 83 361 - -
Stsc181248g00005 391 SMART PP2C_SIG_2 113 358 IPR001932 -
Stsc181248g00005 391 Gene3D - 77 362 IPR036457 -
Stsc181248g00005 391 ProSitePatterns PPM-type phosphatase domain signature. 137 145 IPR000222 GO:0043169
Stsc181248g00005 391 CDD PP2Cc 97 358 IPR001932 -
Stsc181248g00005 391 ProSiteProfiles PPM-type phosphatase domain profile. 98 358 IPR001932 -
Stsc181248g00005 391 SMART PP2C_4 88 356 IPR001932 -
Stsc181248g00005 391 Pfam Protein phosphatase 2C 99 350 IPR001932 -
Stsc181248g00005 391 SUPERFAMILY PP2C-like 92 359 IPR036457 -
Stsc181248g00005 391 PANTHER PROTEIN PHOSPHATASE 2C 88 356 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181248g00005 Stsc-Chr181248 14934 18650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181248g00005 11 390 PP2C-type Phosphatase Gene Family AT2G33700 70.649 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181248g00005 K14803 - gmx:100778015 659.448