Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181247g00039 ATGGCAAATCATCACAAGAGTACCCTTAAGTTTGACATTGAACAATTTGTTTATGTCAAACCATCAAAACCCACACCTATTGGCACTCTTTCACTCTCCACAATTGATAATATATGCGGTATGAATGGCTTTTGCTTTGTTGTTCATGTTTATGAATCACCAAAAGACAGAAAAAATAGTTCCCAAAAAGACCCTGCACTTATGATCAAAGAAGCACTCTCAAAGGCTTTGTTTTATTACTACCCTTTGGCGGGTAGGATTGTAAAACATGCGGATGGGAAATTAAGAGTTAATTGCAATAATGCAAATGGTGTTCCATTTGTAGAAGCTATTGCTAATTGCAACCTTTCTTCTCTTAACTACCTTGATGGTAGTAACACTGAGATTGCAAAGCACTTGGTGCTTGATCTCGAATCTGAAGATGAACATGGCTTCCAAGTATACCCTATGGTGGTCAAGGTCACCAAGTTTCTTTGTGGGGGATTCACTATTGGGTTAGGAACCTCGCATAACATAATTGATGGGAGTGGAACATCTCAATTCTTACAAGCTATAGCCGAATTCGTGAGCGGAAAAAACGAGCCCTCAGTGAAGCCTCCTGCATGGGAAAGAGAAAAATTTGTTGGATCAATTACCAAACAACCCTTGGAATTTCCCATGGACAAGGCTTCAGCCGCGGTCTCGCCTTACTTGCCCACCACAAAACTTGTGAATGCATGCTTTAAAGTCGATAATGAGAGCATAAAAAGGCTCAAGATGAGTTTGATGAAGGAAATCAACAATGACCAAAACAACAACAACACAATGGAAGAAAACTTCACAAGCTTTGAGTGTCTTGCTTCCTATGTTTGGAGGGCAAGAACAAGAGCCTTGAAATTGAACAGTGATGGTAAAGTTATGTTAAGCATCCAAGTAGGGCTAAGTAAGCACTTTGATCCTCCTTTGCCTAAAGGGTATTATGGGAATACTACTTTGGATGCAATATGTGTGTTGACCATTAGAGAAGTTAACGAAAAACCGCTATCCCATGTGGCCAAAATGATCAAAGAAGCTAAGAGGGTTGTTCGGACAAAGGAACACATCAAGAGATTAATGGACACGTTGGAAACGGAAAACGAGGAGTTTGACTGGGATGGAAGGGGTGCATGCATGTGTTTGACTGAGTGGAAACATTTGGGTTTCTCCAAGAACATGGATTTTGGATGGACACAACCGGTGAATGTAGTTCCTGCCCCATGTGGTATGTTTGATAAATTGGGTTTGTGCATTTTCTCGTCTCCGAGTAGCTTGGATCCTTCAATGGAGGGAGGTTCTAGGATCTTTGTGTCACTCCCCAATGCTGCCATACCCAAGTTTAGGGAGGAGATTGAGGCTCTATCTAAATATCAAGCTTATTAA 1398 0.4106 MANHHKSTLKFDIEQFVYVKPSKPTPIGTLSLSTIDNICGMNGFCFVVHVYESPKDRKNSSQKDPALMIKEALSKALFYYYPLAGRIVKHADGKLRVNCNNANGVPFVEAIANCNLSSLNYLDGSNTEIAKHLVLDLESEDEHGFQVYPMVVKVTKFLCGGFTIGLGTSHNIIDGSGTSQFLQAIAEFVSGKNEPSVKPPAWEREKFVGSITKQPLEFPMDKASAAVSPYLPTTKLVNACFKVDNESIKRLKMSLMKEINNDQNNNNTMEENFTSFECLASYVWRARTRALKLNSDGKVMLSIQVGLSKHFDPPLPKGYYGNTTLDAICVLTIREVNEKPLSHVAKMIKEAKRVVRTKEHIKRLMDTLETENEEFDWDGRGACMCLTEWKHLGFSKNMDFGWTQPVNVVPAPCGMFDKLGLCIFSSPSSLDPSMEGGSRIFVSLPNAAIPKFREEIEALSKYQAY 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181247g00039 465 Coils Coil 252 272 - -
Stsc181247g00039 465 Pfam Transferase family 17 458 - -
Stsc181247g00039 465 Gene3D - 231 456 IPR023213 -
Stsc181247g00039 465 Coils Coil 354 374 - -
Stsc181247g00039 465 PANTHER ACYL TRANSFERASE 4 16 457 - -
Stsc181247g00039 465 Gene3D - 7 218 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181247g00039 Stsc-Chr181247 257357 258754 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181247g00039 9 411 Monolignol Biosynthesis Gene Families AT5G48930 27.103 7.10e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181247g00039 K20240 - gmx:100783730 480.33