Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181247g00033 ATGGGGGGTTCCTCACCTTGTGCTTCTTGCAAATTGTTGAGGCGGCGTTGCACCAAAGAATGCATCTTTGCTCCTTATTTCCCTTCTGATGACCCTCGCAAGTTTGCCATTGTTCACAAGGTCTTTGGCGCTAGCAATGTCAGCAAAATGCTCCAGGAGCTTCCAATTCATCAAAGAGGAGATGCTGTAAGCAGTTTAGTTTATGAGGCAAATGCAAGAGTGAGAGACCCTGTTTATGGTTGTGTTGGAGCAATATCATACCTTCAAAATCAAGTCACACAATTGCAAATGCAACTTGCAGTGGCTCAGGCAGAGATTCTAAGCATCCAGATGCAGCCGGAGCCTAGTAATAATAATAATAATACTACCTTATTACCAAATCAATTATTATTAGATCAAGATGATAATGAAAAGTTTCTCCTCCTATCAGCATCATCAGCTGAAAACAATAACAACTATGAGTTTCTTCCCCAATATCTTAGCAGCTTTGCTTCATCTTCTTCTTCATCTTCAAATGTATTCCAAGACTCTGAGCCTCTTAAGCGAGAGTCTTTTTGTTAA 561 0.4046 MGGSSPCASCKLLRRRCTKECIFAPYFPSDDPRKFAIVHKVFGASNVSKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISYLQNQVTQLQMQLAVAQAEILSIQMQPEPSNNNNNTTLLPNQLLLDQDDNEKFLLLSASSAENNNNYEFLPQYLSSFASSSSSSSNVFQDSEPLKRESFC 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181247g00033 186 Coils Coil 85 105 - -
Stsc181247g00033 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 144 - -
Stsc181247g00033 186 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Stsc181247g00033 186 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181247g00033 Stsc-Chr181247 194704 195605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181247g00033 3 185 AS2 family AT2G30130 64.433 1.19e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc181247g00033 LOB 2.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181247g00033 - - aip:107644491 277.715