Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181247g00028 ATGGCAGCAACAAGAAGCATTCACAATGGTATCCTCCGAAACCATTCCCTCTATTTCTCCACTTCTTGTTACCGGAAACAGATTTCCCTTGCTAGTCTCTTCCAAAGGTACGGTTTTCCCTCTTCCCAAATTCCACACTTCATCTCCAAGAACTCTTTTCTCTTAGATTCCAATATACCTGTAATCGAGGAATCACTTGCCACTCTCTTCTCCTTTCGAATTCCTCAAAATGCCCTGGTCTCCTTAATTCGCAAGTGCCCCGCTGTGCTGGAACCCAAGTTCCTCCAAAACTGGGAGCAGGAATTGTCAAAGCTCAAGGCCATGAACCCTTCCTCGTCCATGATTGTGAACTTCTTGGAGTGTTCTAGAAGATTCCAGTTGGACCCGGTTGAGGCTTGCAAGAAAGTTGAGACGTTGAAGGGTTCAGGATTTTCCGATGATTTAGTGTCGAAGATTTTGGAGGGTTTTCCGAGTGTGATTGCAGTAAGTAAGAGCGATATTGCTTCTGTGATTGAGTTTCTAGTGGAATATGGGATTCCTAGGGAGGTGGTTGATCGAGTTGTGCGGTTGTACCCTAGGGTTTTGGGAATCGGGGTTGAGCAGAGGTTGAAGCCCTTGATTCGTGAATTGAAGGAATTAGGATTTTCTGTGCACGAAATTAGGAGTGAGGTAATTAGGGTGCCAAGGATTCTGGGAATGGAGATTGGAGAATTTTCGCAGTGCTTGCGGTTGCTAGAGGGTTTGAAGTGTAGGGAAGCCATTAAAGAGAGAATTTTTCAAGAGGGTTTGCTGAGGGCTTGTTTTGAAGTGAAGTTAAGAGTGGATTGCTTGTGCGGTCAAGGTTTGATTCGAAGTGATGCTTTGAAGTTGTTGTGGAAGGAGCCGAGGTTGATAACCTATGATGTAGAGTCGATTAAGAAGAAGATTAGATTTTTGGTGCAGAGAATGAATTATAGTATTGATTGTTTGCTTCATGTTCCTGAGTACTTGGGTGTGAACTTTGAGAAGCAGATTGTTCCTAGGTACAATGTGATGGAGTACTTGAAAGCGAAAGGCGCAATTGGTTTCGAGGTTGGACTAAAAGACATGGTAAAACCAAGTAGGCTTAGGTTTTACAATCTTTATGTCAAGCCCTATCCAAAGTGTGAAAAGATTTATGAGCGATTTTCTGGAACCACCATAGTTAAAAGTAAGCATCCACCTGGTCTATGGAAACTCTTTAAACCCTACAAGTTCCCAACAACCGATGAAGATGCGAAGAATTTGAAGTCATTCATGGATTCATTGGTATAG 1293 0.43 MAATRSIHNGILRNHSLYFSTSCYRKQISLASLFQRYGFPSSQIPHFISKNSFLLDSNIPVIEESLATLFSFRIPQNALVSLIRKCPAVLEPKFLQNWEQELSKLKAMNPSSSMIVNFLECSRRFQLDPVEACKKVETLKGSGFSDDLVSKILEGFPSVIAVSKSDIASVIEFLVEYGIPREVVDRVVRLYPRVLGIGVEQRLKPLIRELKELGFSVHEIRSEVIRVPRILGMEIGEFSQCLRLLEGLKCREAIKERIFQEGLLRACFEVKLRVDCLCGQGLIRSDALKLLWKEPRLITYDVESIKKKIRFLVQRMNYSIDCLLHVPEYLGVNFEKQIVPRYNVMEYLKAKGAIGFEVGLKDMVKPSRLRFYNLYVKPYPKCEKIYERFSGTTIVKSKHPPGLWKLFKPYKFPTTDEDAKNLKSFMDSLV 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181247g00028 430 Gene3D Transcription termination factor 3, mitochondrial 163 392 IPR038538 -
Stsc181247g00028 430 SMART mt_12 288 319 IPR003690 GO:0003690|GO:0006355
Stsc181247g00028 430 SMART mt_12 150 180 IPR003690 GO:0003690|GO:0006355
Stsc181247g00028 430 SMART mt_12 185 216 IPR003690 GO:0003690|GO:0006355
Stsc181247g00028 430 SMART mt_12 221 251 IPR003690 GO:0003690|GO:0006355
Stsc181247g00028 430 SMART mt_12 320 354 IPR003690 GO:0003690|GO:0006355
Stsc181247g00028 430 Pfam mTERF 119 238 IPR003690 GO:0003690|GO:0006355
Stsc181247g00028 430 Pfam mTERF 273 371 IPR003690 GO:0003690|GO:0006355
Stsc181247g00028 430 PANTHER CGI-12 PROTEIN-RELATED 22 379 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181247g00028 Stsc-Chr181247 177063 178355 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc181247g00028 mTERF 4.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181247g00028 - - aip:107646489 681.789