Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181247g00027 ATGTCCAAGGTGGTTTGTGTCACCGGAGCCAGCGGTGCCATCGGATCATGGCTCGTTAAGCTCCTCCTCGAGCGCGGCTATACCGTCCATGCTTGTGTCCAAGATATCAAGGATGAGAAGGAGACAAAGCATTTGGAAGCCATGGAAGGAGCAAAGGGTAATCTCCATTTCTTCGAGATGGATCTTCTAGACAACGAGTCCATCGTGGCCGCCATAAAGGGTTGCGCCGGAGTGTTCCACCTAGCATGTCCGAACATCATAGGACAAGTGAAAGACCCAGAGAAGGAGATATTGGAACCGGCAATTCAAGGGACAGTGAATGTGCTGAAGGCAGCAAAGGAAGCAGGAGTGGAGAGAGTGGTTGCAACTTCATCAATCTCTGCTATAATTCCAAGTCCTAATTGGCCTTCTGATAAGATTAAGAATGAGGATTGTTGGACTGATCTTGATTACTGCAAGCAGAAGGGGTTATACTATCCTATTGCAAAGACATTGGCAGAGAAAGCAGGGTGGGATTTTGCTAAAGAGACAGGTTTTGATGTGGTTATGATCAATCCTGGCACTGCTTTGGGCCCTCTCATTCCACCAAGAATCAATTCTAGCATGGCTGTTCTTGTTAGCGTCCTTAAAGGTGACAAAGAAACTTATGAGGATTTCTTCATGGGAATGGCACACTTTAAGGACATAGCAATGGCACATATCTTGGCTTTTGAGAACAAGAAAGCATCTGGAAGACACTTGTGTGTAGAAGGTATTCGTCATTATGGTGATTTTGTTGCTAAGGTTGCTGAGCTTTACCCTCAATACAATGTCGCCAAGTTGCCAAAGGATACCCAACCAGGGNNNNNNNNNNTGTTGAGAGCAAAAGATGCATCAAAGAAGCTCATTGATTTAGGGTTAGAGTTCACTCCTATTGATCAAATTATCACTGATGCTGTGGAGAGTTTGAAGAGCCTTGGTTATGTCTAA 969 0.4458 MSKVVCVTGASGAIGSWLVKLLLERGYTVHACVQDIKDEKETKHLEAMEGAKGNLHFFEMDLLDNESIVAAIKGCAGVFHLACPNIIGQVKDPEKEILEPAIQGTVNVLKAAKEAGVERVVATSSISAIIPSPNWPSDKIKNEDCWTDLDYCKQKGLYYPIAKTLAEKAGWDFAKETGFDVVMINPGTALGPLIPPRINSSMAVLVSVLKGDKETYEDFFMGMAHFKDIAMAHILAFENKKASGRHLCVEGIRHYGDFVAKVAELYPQYNVAKLPKDTQPGXXXXLRAKDASKKLIDLGLEFTPIDQIITDAVESLKSLGYV 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181247g00027 322 Pfam NAD dependent epimerase/dehydratase family 5 242 IPR001509 -
Stsc181247g00027 322 CDD FR_SDR_e 5 300 - -
Stsc181247g00027 322 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 3 313 - -
Stsc181247g00027 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 316 IPR036291 -
Stsc181247g00027 322 FunFam Cinnamoyl-CoA reductase 1 1 322 - -
Stsc181247g00027 322 Gene3D - 1 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181247g00027 Stsc-Chr181247 167750 172020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181247g00027 3 322 Monolignol Biosynthesis Gene Families AT5G58490 65.625 1.22e-164 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181247g00027 - - gmx:100806281 553.903