Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181247g00022 ATGGCAGCAACAAGAAGCATTCACAATGGTATCCTACGAAACCATTCCCTCTATTTCTCCACTTCTTGTTACCGGAAACAGATTTCCCTTGCTAGTCTCTTCCAAAGGTACGGTTTCCCCTCTTCCCAAATTCCACACTTCATCTCCAAGAACTCCTTTCTCTTAGATTCCAATATACCTGAAATCGAAAAATCACTAGCCACTCTCTTCTCCTTTCGAATTCCCCAAAATGCCCTTGTCTCCCTCATTCGCAATTGCCCCGCTGTGCTGGAACCCAAGTTCCTCCAAAACTGGGAGCAGGGATTGTCAAAACTCAAGGCCATGAACCCTTCCTCATCCATGATTGTGAACTTCTTGGAGTGTTCTAGAAGATTCCAGCTGGACCCGGTTGAGGCTTGCAAGAAAGTTGAGACGTTGAAATGTTTGGGATTTTCCGATGACTTAGTGTCGCAGGTTTTGGAGGATTTTCCAAGTGTGATTGCAGTAAGCAAGAGCAAAATTGCTTCTGTGATTGAGTTTCTAGTGGAATTTGGGATTCCTAGAGACGAGGTGGTTGATCGAGTTGTGCGGTTGAACCTTAGGGTTTTGGGAATTGGGGTTGAGCAGAGGTTAAAACCCTTGATTCGTGAATTGAAGGAGTTAGGATTTTCTGCGCACGAAATTAGGAGTGAGGTAATTAGGGAGCCAAGGATTCTGGGAATGGAGATTGGGGAATTTTCACAGTGTTTGCGGTTGCTAGAGGGTTTGAAGTGTAGGGAAGCCATCAAAGAGAGAATTTTTAAGGAGGGTTTGCTGAGAGCTTGTTTTGAAGTGAAGTTAAGAGTGGATTGCTTGTGCGGTCAAGGTTTGATTCGAAGTGATGCTTTGAAGTTGTTGTGGAAAGAGCCGAGGTTGATAACCTATGATGCAGAGTCGATTGAGAAGAAGATTAGGTTTTTGGTGCAGAGAATGAATTATAGTGTTGATTGTTTGCTTCATGTTCCTGAGTACTTGGGTGCAAACTTTGAGAAGCAGATTGTTCCTAGGTACAATGTGATGGAGTACTTGAAAGCGAAAGAAGCCCTTGGTTTCGAGGTTGGACTAAAGGACATGGTAAAGCCAAGTAGGCTTAGGTTTTACAATCTTTATGTCAAGCCCTATCCAGAGTGTGAAAAGATTTATGGGCGATTTTCTGGAACCACCATAGTTAAAAGTAAGCATCCACCTGGTCTATGGAAACTCTTTAAACCCCACAAGTTCCCAACTACCGATGAAGATGCGAAGAATTTGAAGTCATTCATGGACTCATTGGCTCTGCAGTTCCGGAATCAATTCCGGGACTACAGAGCTCAGTATAAGTAA 1341 0.4355 MAATRSIHNGILRNHSLYFSTSCYRKQISLASLFQRYGFPSSQIPHFISKNSFLLDSNIPEIEKSLATLFSFRIPQNALVSLIRNCPAVLEPKFLQNWEQGLSKLKAMNPSSSMIVNFLECSRRFQLDPVEACKKVETLKCLGFSDDLVSQVLEDFPSVIAVSKSKIASVIEFLVEFGIPRDEVVDRVVRLNLRVLGIGVEQRLKPLIRELKELGFSAHEIRSEVIREPRILGMEIGEFSQCLRLLEGLKCREAIKERIFKEGLLRACFEVKLRVDCLCGQGLIRSDALKLLWKEPRLITYDAESIEKKIRFLVQRMNYSVDCLLHVPEYLGANFEKQIVPRYNVMEYLKAKEALGFEVGLKDMVKPSRLRFYNLYVKPYPECEKIYGRFSGTTIVKSKHPPGLWKLFKPHKFPTTDEDAKNLKSFMDSLALQFRNQFRDYRAQYK 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181247g00022 446 Pfam mTERF 274 372 IPR003690 GO:0003690|GO:0006355
Stsc181247g00022 446 Pfam mTERF 127 238 IPR003690 GO:0003690|GO:0006355
Stsc181247g00022 446 PANTHER CGI-12 PROTEIN-RELATED 22 380 IPR003690 GO:0003690|GO:0006355
Stsc181247g00022 446 SMART mt_12 150 180 IPR003690 GO:0003690|GO:0006355
Stsc181247g00022 446 SMART mt_12 222 252 IPR003690 GO:0003690|GO:0006355
Stsc181247g00022 446 SMART mt_12 321 352 IPR003690 GO:0003690|GO:0006355
Stsc181247g00022 446 SMART mt_12 289 320 IPR003690 GO:0003690|GO:0006355
Stsc181247g00022 446 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Stsc181247g00022 446 Gene3D Transcription termination factor 3, mitochondrial 163 390 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181247g00022 Stsc-Chr181247 140518 144489 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc181247g00022 mTERF 5.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181247g00022 - - aip:107646489 671.003