Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181247g00014 ATGGCCACAGACACAAAAACACCAACACCAGCAGCGAAATTTCAGAACCCAGAGTTTCGAGACTTAACGGCGCCGTTAACCTCCCAAGATGGCCTCCGTTTCTGGCAGCTAATGATCGCCGGCTCCGTTGCTGGCTCCGTCGAACACATGGCCATGTTCCCCGTCGACACCGTCAAGACCCATATGCAAGCCCTAGGCACCTGCCCGCTCAAACGAAACGTCACCGTTTCGCAAGCCCTAAGAACCATCGTCACCTCGAACGGCGGGCCCATCGCTCTCTACCGCGGCATCGGCGCAATGGGCCTGGGAGCAGGCCCGGCCCATGCCGTGTACTTCTCCTTCTACGAGACCTGCAAGACGTTCTTCTCGCGCGGGAACCCTAACAATTCGTTGGCGCACGCTGTTTCCGGTGTGTGCGCCACTGTTGTGAGCGATGCAGTGTTCACCCCGATGGACATGGTGAAGCAGAGGCTTCAGCTGAGTGGTGCGAACGGTTATGGTGGTGTTTGGGACTGTGTGAAGAGGGTGATGAGTGAGGAAGGGTTTGCTGCTTTCTATGCTTCGTATAGGACCACTGTGTTGATGAATGCGCCTTTTACCGCTGTCCATTTCGTTACTTATGAGGCTGCCAAACGCGGCCTTATTGAGGTGGCGACGGCGGAGAGCGCCGACGATGAACGGCTCATTGTTCATGCGACTGCTGGTGCTGCTGCCGGTGCTTTGGCCGCGGCAGTTACCACACCACTTGACGTGGTTAAAACTCAGTTACAGTGTCAGGGTGTCTGTGGATGCGATAGGTTTGAAAATGGTTCAATTGGGGATGTTTTAAAAACAATAGTGAAAAAGGATGGATACAGAGGGCTAATGCGAGGGTGGATTCCAAGAATGCTGTTCCATGCTCCTGCTGCCGCAATCTGCTGGTCAACATATGAGGCCGGGAAATCTTTTTTCCAAGAATTAAATCGGAGTAAAGAAAGTAGCACTATCCTATGA 993 0.5358 MATDTKTPTPAAKFQNPEFRDLTAPLTSQDGLRFWQLMIAGSVAGSVEHMAMFPVDTVKTHMQALGTCPLKRNVTVSQALRTIVTSNGGPIALYRGIGAMGLGAGPAHAVYFSFYETCKTFFSRGNPNNSLAHAVSGVCATVVSDAVFTPMDMVKQRLQLSGANGYGGVWDCVKRVMSEEGFAAFYASYRTTVLMNAPFTAVHFVTYEAAKRGLIEVATAESADDERLIVHATAGAAAGALAAAVTTPLDVVKTQLQCQGVCGCDRFENGSIGDVLKTIVKKDGYRGLMRGWIPRMLFHAPAAAICWSTYEAGKSFFQELNRSKESSTIL 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181247g00014 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 128 213 IPR018108 -
Stsc181247g00014 330 PANTHER MITOFERRIN-1-RELATED 31 319 - -
Stsc181247g00014 330 SUPERFAMILY Mitochondrial carrier 31 311 IPR023395 -
Stsc181247g00014 330 Gene3D Mitochondrial carrier domain 215 329 IPR023395 -
Stsc181247g00014 330 Gene3D Mitochondrial carrier domain 13 214 IPR023395 -
Stsc181247g00014 330 PRINTS Mitochondrial carrier protein signature 37 50 IPR002067 GO:0055085
Stsc181247g00014 330 PRINTS Mitochondrial carrier protein signature 50 64 IPR002067 GO:0055085
Stsc181247g00014 330 PRINTS Mitochondrial carrier protein signature 235 257 IPR002067 GO:0055085
Stsc181247g00014 330 PRINTS Mitochondrial carrier protein signature 186 204 IPR002067 GO:0055085
Stsc181247g00014 330 PRINTS Mitochondrial carrier protein signature 143 161 IPR002067 GO:0055085
Stsc181247g00014 330 PRINTS Mitochondrial carrier protein signature 96 116 IPR002067 GO:0055085
Stsc181247g00014 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 226 316 IPR018108 -
Stsc181247g00014 330 Pfam Mitochondrial carrier protein 227 319 IPR018108 -
Stsc181247g00014 330 Pfam Mitochondrial carrier protein 129 215 IPR018108 -
Stsc181247g00014 330 Pfam Mitochondrial carrier protein 32 124 IPR018108 -
Stsc181247g00014 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 32 121 IPR018108 -
Stsc181247g00014 330 FunFam Mitochondrial RNA-splicing protein MRS3 164 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181247g00014 Stsc-Chr181247 96560 100370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181247g00014 135 326 Chloroplast and Mitochondria Gene Families AT1G07030 25.773 1.74e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181247g00014 K15113 - gmx:100802640 502.671