Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181247g00007 ATGAGAGTTTTCATTCTTCTATTCTTGCTGCTGCAACTTGTTGACCTCTCACATGGGCAAACAAAGAGCCAAGAGAACAACACAGGGTTCCAGTGCAGTTCAAGAAGCTATCCATGTCAGGCTTATGCTTTCTATAGAGCACAAAGTGCTGAGTTTCTTGACCTGGCCTCCATAGCAGACCTCTTCCAAGTTAGCCGCCTCATGATCTCAAAACCAAGCAACATATCCTCTGATTCTGTTTCCTCTCCTCTAATCCCAAACCAGCCCCTCTTCATTCCCATAACATGCTCCTGCAACTCCATCAACTCCACCTTTGGTTCCATCTCCTATGCTAACATCTCCTACACCATCAAACCCAATGATACCTTCTTTCTTGTTTCCACCATCAAGTTTGAGAACCTCACAACCTACCCTTCTGTTGAGGTTGTCAACCCAAACCTTGTAGCAACCAGACTCCAAATTGGGGACAATGCTATCTTCCCTATCTTCTGCAAGTGCCCAGATAGAAACACAACTGTGTCCAACACAAGAGCTAATTACATGATCTCCTATGTTGTCCAACCTTCTGATAACCTATCCTCCATTGCTTCAAGGTTTGGATCACAGGAGAAGGCCATAGCTTCTGTCAACACCAACAAATTCAATGTCTATGACACCATATTCGTCCCCGTAACCCGGCTTCCGGTTCTTTCACAGCCAAACACAAGTGCTGCTGCTGCTCCTTCTCCTACTCCTACTCCTAGTACTAATGGTAGCTCTCATGACAGAACAGGCACTGTGAGAGGGTTGGCAATTGGATTGGGAATTGCTGGTTTGTTATTGATATTGGTGATTGGGTTGTGGATTTATAGGGAGAGTGTGTTGAAGGACAGGATGTGGGCTGGCAGGGATGAGGAGGAGCAGAGGCAGAAGCAAGGCAGGTTGTTTATGGGAGATGGGAAAGGAGGGAAGCAGCAGATGGATGTGAAGCTGATGGCTAATGTTTCTGATTGTTTGGATAAGTATAGAGTGTTTGGAATTGAGGAACTCATTGAAGCCACTGATGGATTCAGTGACAGTTGCCTCATTCAAGGTTCTGTGTACAAAGGTACCATTGATGGAGAAATCTATGCTATCAAGAAGATGAAGTGGAATGCCTATGAGGAGCTCAAGATCTTACAGAAGGTAAACCATGGGAATCTGGTGAAGTTAGAAGGGTTCTGCATAGACTCAGAAGAAGGTAACTGCTATCTAGTATATGAGTATGTAGAGAATGGATCTCTCTACACATGGCTGCATGAAGAGGATGGGAAGAATGAGAAGCTGAGCTGGAAGACAAGGGTGAGAATAGGCATAGACATAGCCAATGGTCTTCAATACATTCATGAGCACACAAGGCCAAGAGTAGTGCACAAAGACATAAAGAGCAGCAACATTCTCTTAGACTCAAACATGAGGGCTAAGATTGCCAACTTTGGCCTTGCCAAGTCAGGAATGAATGCCATAACAATGCACATTGTTGGCACTCAGGGCTACATTGCGCCCGAGTATCTAGCCGATGGCGTCGTCTCCACCAAGATGGATGTGTTTTCTTTTGGGGTTGTGCTGCTCGAACTCATATCCGGCCGGGAAGCCATCGACGAGGAGGGTAATCTGCTGTGGATGAGTGCTGTCAAGACCTTTGAAAAGGTAAGTAGTGATGAAGAAAAGGCTAAGAGGCTGAGGGAGTGGATTGACAAGGCTATGTTGAGGGACAGTGTCTCTATGGATAGTTTGTTGGGAGTATTGGGGATTGCTATTGCTTGTTTGCATAAGGAGCCTTCAAAGAGGCCTAGCATTGTTGATGTTGTCTATGCACTCTGCAAGAGTGAGGATGCAGGCTTTGAAACCTCTGAGGAAGGTATTGGATCCCCTCGCGTTACGGCTAGGTGA 1911 0.4584 MRVFILLFLLLQLVDLSHGQTKSQENNTGFQCSSRSYPCQAYAFYRAQSAEFLDLASIADLFQVSRLMISKPSNISSDSVSSPLIPNQPLFIPITCSCNSINSTFGSISYANISYTIKPNDTFFLVSTIKFENLTTYPSVEVVNPNLVATRLQIGDNAIFPIFCKCPDRNTTVSNTRANYMISYVVQPSDNLSSIASRFGSQEKAIASVNTNKFNVYDTIFVPVTRLPVLSQPNTSAAAAPSPTPTPSTNGSSHDRTGTVRGLAIGLGIAGLLLILVIGLWIYRESVLKDRMWAGRDEEEQRQKQGRLFMGDGKGGKQQMDVKLMANVSDCLDKYRVFGIEELIEATDGFSDSCLIQGSVYKGTIDGEIYAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIDSEEGNCYLVYEYVENGSLYTWLHEEDGKNEKLSWKTRVRIGIDIANGLQYIHEHTRPRVVHKDIKSSNILLDSNMRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFSFGVVLLELISGREAIDEEGNLLWMSAVKTFEKVSSDEEKAKRLREWIDKAMLRDSVSMDSLLGVLGIAIACLHKEPSKRPSIVDVVYALCKSEDAGFETSEEGIGSPRVTAR 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181247g00007 636 SUPERFAMILY Protein kinase-like (PK-like) 335 613 IPR011009 -
Stsc181247g00007 636 Pfam Protein kinase domain 358 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181247g00007 636 Gene3D Phosphorylase Kinase; domain 1 320 415 - -
Stsc181247g00007 636 Gene3D LysM domain 168 232 IPR036779 -
Stsc181247g00007 636 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 4 615 - -
Stsc181247g00007 636 Pfam LysM domain 184 221 IPR018392 -
Stsc181247g00007 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Stsc181247g00007 636 FunFam PTI1-like tyrosine-protein kinase 3 416 624 - -
Stsc181247g00007 636 SMART serkin_6 350 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181247g00007 636 CDD LysM 182 210 IPR018392 -
Stsc181247g00007 636 MobiDBLite consensus disorder prediction 233 255 - -
Stsc181247g00007 636 ProSiteProfiles LysM domain profile. 182 229 IPR018392 -
Stsc181247g00007 636 SMART LysM_2 183 223 IPR018392 -
Stsc181247g00007 636 ProSiteProfiles Protein kinase domain profile. 304 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181247g00007 636 Gene3D Transferase(Phosphotransferase) domain 1 416 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181247g00007 Stsc-Chr181247 47613 51041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181247g00007 5 615 Receptor kinase-like Gene Family AT2G23770 32.915 8.41e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc181247g00007 Pkinase 1.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181247g00007 - - lang:109352405 888.641