Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181246g00080 ATGAGTTGGAGTTCGTGGTTGCATGCACCATCATCAACCACTAACAATAAGAAGCTGAAGGGTGTTAGGCGTCGAAAGTGGGGTAAATGGGTGTCGGAGATTCGTGTTCCGGGAACCCAAGAGCGTCTCTGGTTAGGAACATACGCAACGCCGGAGGCAGCTGCCGTGGCTCACGACGTCGCCGTTTATTGCCTCAGAAGGCCTTCTTCCTTGGAGAAGCTTAACTTCCCTGAAACTTTGTCTTCTTATCATCAATGCATTCAGTTTAGAGAGGATTTGTCACCGAGGTCCGTTCAGAAAGTGGCTTCAGATGTTGCCATGGATGTTGATGCTCGCAACATTAATGGAAGCTCATCAGTAACGCCCACCGCCGCGGTTGCTACCGACTCCGTTGCGGTGGTAGAAACTAATAGTAGTGGCAGTTATGATGTTGGTGGTGGATTGGGAGGAGATTGCGGTGGCGCTCTGTCTTGGTGGGAAGGTTTGGGTGGTGATGATAGTGGCCATGGAAGTAGTAGTAGTGGTGAAGATAATAATCATGGTGGTGGACAAGGGAATCAACCCTTCAACATTTCCATTGAAGATTATCTTTAA 594 0.4882 MSWSSWLHAPSSTTNNKKLKGVRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDVAVYCLRRPSSLEKLNFPETLSSYHQCIQFREDLSPRSVQKVASDVAMDVDARNINGSSSVTPTAAVATDSVAVVETNSSGSYDVGGGLGGDCGGALSWWEGLGGDDSGHGSSSSGEDNNHGGGQGNQPFNISIEDYL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181246g00080 197 CDD AP2 17 79 IPR001471 GO:0003700|GO:0006355
Stsc181246g00080 197 MobiDBLite consensus disorder prediction 167 191 - -
Stsc181246g00080 197 MobiDBLite consensus disorder prediction 163 197 - -
Stsc181246g00080 197 Gene3D AP2/ERF domain 17 79 IPR036955 GO:0003700|GO:0006355
Stsc181246g00080 197 SMART rav1_2 18 83 IPR001471 GO:0003700|GO:0006355
Stsc181246g00080 197 ProSiteProfiles AP2/ERF domain profile. 18 77 IPR001471 GO:0003700|GO:0006355
Stsc181246g00080 197 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Stsc181246g00080 197 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Stsc181246g00080 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 120 - -
Stsc181246g00080 197 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Stsc181246g00080 197 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181246g00080 Stsc-Chr181246 398875 399658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181246g00080 14 111 AP2-EREBP Transcription Factor Family AT1G71520 61.000 1.40e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc181246g00080 AP2 6.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181246g00080 - - adu:107488358 248.054