Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc181246g00074 | ATGCAGGGTAACGGAACCGATGGAGAAGCCTTGGATTTTGAGCCTGAGGACGACGACCTCATGGACGAGGACGCCGCCGCTGACGCCGACGCTGACCCCCGCGCTCCTGCTCCTAAGCTCAAGTCCGCCATCACCGCCGGTGCTTCCTCCTCCCTCTCCGCCCCTAAGAAGACCAAGGGCCGTGGCTTCCGCCAGGACTCCGATCCCAACCGCAACACCCGCCTCCAGGGCTCCGATTTCGACTCCCTCGCCACCGAGGGCGGTCCTGGTCCTCAAAGATCCATTGAAGGATGGATTATTCTGGTGACGGGTGTGCACGAGGAAGCGCAGGAGGATGATTTGCAAAACGCGTTTGGTGAATACGGAGAGATTAAGAACTTGCATTTGAATCTCGACCGTCGTACTGGTTTTGTCAAAGGTTATGCCCTGATTGAATATGAGCGTGCTGAGGAAGCTCGTAATGCAATAGAGAATTTGAATGGATCTGAGCTTCTTACACAAACCATTTACGTTGACTGGGCATTCAGCAGTGGACCTATTAACGAGTCAGCAAGAAGAAAGAATGTTAGACCAACTCGTGAGCGACGCTCCAGGAGCCCTCGCAGGAGATATTGA | 615 | 0.5447 | MQGNGTDGEALDFEPEDDDLMDEDAAADADADPRAPAPKLKSAITAGASSSLSAPKKTKGRGFRQDSDPNRNTRLQGSDFDSLATEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEARNAIENLNGSELLTQTIYVDWAFSSGPINESARRKNVRPTRERRSRSPRRRY | 204 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc181246g00074 | 204 | SUPERFAMILY | RNA-binding domain, RBD | 91 | 201 | IPR035979 | GO:0003676 | |
Stsc181246g00074 | 204 | SMART | rrm1_1 | 99 | 172 | IPR000504 | GO:0003723 | |
Stsc181246g00074 | 204 | MobiDBLite | consensus disorder prediction | 190 | 204 | - | - | |
Stsc181246g00074 | 204 | MobiDBLite | consensus disorder prediction | 1 | 91 | - | - | |
Stsc181246g00074 | 204 | MobiDBLite | consensus disorder prediction | 182 | 204 | - | - | |
Stsc181246g00074 | 204 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 100 | 169 | IPR000504 | GO:0003723 | |
Stsc181246g00074 | 204 | CDD | RRM_RBM8 | 92 | 179 | IPR033744 | GO:0003729 | |
Stsc181246g00074 | 204 | MobiDBLite | consensus disorder prediction | 10 | 26 | - | - | |
Stsc181246g00074 | 204 | PRINTS | RNA binding motif protein 8 family signature | 52 | 64 | IPR008111 | GO:0003723|GO:0005634|GO:0005737|GO:0006396 | |
Stsc181246g00074 | 204 | PRINTS | RNA binding motif protein 8 family signature | 163 | 175 | IPR008111 | GO:0003723|GO:0005634|GO:0005737|GO:0006396 | |
Stsc181246g00074 | 204 | PRINTS | RNA binding motif protein 8 family signature | 89 | 103 | IPR008111 | GO:0003723|GO:0005634|GO:0005737|GO:0006396 | |
Stsc181246g00074 | 204 | PRINTS | RNA binding motif protein 8 family signature | 145 | 161 | IPR008111 | GO:0003723|GO:0005634|GO:0005737|GO:0006396 | |
Stsc181246g00074 | 204 | FunFam | RNA-binding protein 8A-like | 30 | 195 | - | - | |
Stsc181246g00074 | 204 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 98 | 176 | IPR000504 | GO:0003723 | |
Stsc181246g00074 | 204 | PANTHER | RNA-BINDING PROTEIN 8A | 7 | 203 | IPR008111 | GO:0003723|GO:0005634|GO:0005737|GO:0006396 | |
Stsc181246g00074 | 204 | Gene3D | - | 41 | 190 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc181246g00074 | Stsc-Chr181246 | 364712 | 367416 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc181246g00074 | 100 | 174 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 29.333 | 1.04e-08 | 52.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc181246g00074 | K12876 | - | gmx:100527187 | 293.123 |