Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181246g00074 ATGCAGGGTAACGGAACCGATGGAGAAGCCTTGGATTTTGAGCCTGAGGACGACGACCTCATGGACGAGGACGCCGCCGCTGACGCCGACGCTGACCCCCGCGCTCCTGCTCCTAAGCTCAAGTCCGCCATCACCGCCGGTGCTTCCTCCTCCCTCTCCGCCCCTAAGAAGACCAAGGGCCGTGGCTTCCGCCAGGACTCCGATCCCAACCGCAACACCCGCCTCCAGGGCTCCGATTTCGACTCCCTCGCCACCGAGGGCGGTCCTGGTCCTCAAAGATCCATTGAAGGATGGATTATTCTGGTGACGGGTGTGCACGAGGAAGCGCAGGAGGATGATTTGCAAAACGCGTTTGGTGAATACGGAGAGATTAAGAACTTGCATTTGAATCTCGACCGTCGTACTGGTTTTGTCAAAGGTTATGCCCTGATTGAATATGAGCGTGCTGAGGAAGCTCGTAATGCAATAGAGAATTTGAATGGATCTGAGCTTCTTACACAAACCATTTACGTTGACTGGGCATTCAGCAGTGGACCTATTAACGAGTCAGCAAGAAGAAAGAATGTTAGACCAACTCGTGAGCGACGCTCCAGGAGCCCTCGCAGGAGATATTGA 615 0.5447 MQGNGTDGEALDFEPEDDDLMDEDAAADADADPRAPAPKLKSAITAGASSSLSAPKKTKGRGFRQDSDPNRNTRLQGSDFDSLATEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEARNAIENLNGSELLTQTIYVDWAFSSGPINESARRKNVRPTRERRSRSPRRRY 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181246g00074 204 SUPERFAMILY RNA-binding domain, RBD 91 201 IPR035979 GO:0003676
Stsc181246g00074 204 SMART rrm1_1 99 172 IPR000504 GO:0003723
Stsc181246g00074 204 MobiDBLite consensus disorder prediction 190 204 - -
Stsc181246g00074 204 MobiDBLite consensus disorder prediction 1 91 - -
Stsc181246g00074 204 MobiDBLite consensus disorder prediction 182 204 - -
Stsc181246g00074 204 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 169 IPR000504 GO:0003723
Stsc181246g00074 204 CDD RRM_RBM8 92 179 IPR033744 GO:0003729
Stsc181246g00074 204 MobiDBLite consensus disorder prediction 10 26 - -
Stsc181246g00074 204 PRINTS RNA binding motif protein 8 family signature 52 64 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Stsc181246g00074 204 PRINTS RNA binding motif protein 8 family signature 163 175 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Stsc181246g00074 204 PRINTS RNA binding motif protein 8 family signature 89 103 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Stsc181246g00074 204 PRINTS RNA binding motif protein 8 family signature 145 161 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Stsc181246g00074 204 FunFam RNA-binding protein 8A-like 30 195 - -
Stsc181246g00074 204 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Stsc181246g00074 204 PANTHER RNA-BINDING PROTEIN 8A 7 203 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Stsc181246g00074 204 Gene3D - 41 190 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181246g00074 Stsc-Chr181246 364712 367416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181246g00074 100 174 Eukaryotic Initiation Factors Gene Family AT3G11400 29.333 1.04e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181246g00074 K12876 - gmx:100527187 293.123