Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181246g00056 ATGATTAGTATTACTGGGCACAGAAGAACAGAGGCTAATCCAAGTGATGATATCGATAATAATAAGTGTGACATCAACTCCTGCGGAAACTACACACTTCCTATTGAATTCCCGTTTTGGATAAAAACAGAAGGCAACAACAATCGATGTGGGTACCAAGGTTTTGATATAAAGTGTAACAACCAGAACCAACCGTTGCTAAATCTCCCAGAATCCGGCGTCTTCGTGGTAAAAGGAATCGAGTACGAAGAGCAACAAGTTATGATCAACGACCCAGAAGAGTGTCTTCCAAGAAAAATCATGCTCAACCGTGGATTCAGCCTCGCAGATTCCCCTTTTCAATTAGCCAACGGTTTCATGTACCGGAATTACTCGTTTTACAACTGTCCATACGAGCCAGAATCACCGGTGATGATAAGCTGCTTGGGATCGTCGACAAGCAACAACGTTAGCTATTCTGTGGTGGCGGTTTTGTCGTCGGAACCGCCTCAAAGGTTGTTGAATTTGTCGTCGTGCCACTTTGTTACATGGGGTTTGGCACCTGTTCCGAGTTATATACATGAAGATTATTGGACGATTAGCGATGTTGATGTACAGTTGCAGTGGAATGAACCTGATTGCAGATATTGTTTACAACATGGTGGACGCTGTGGTCTGCTACAAGATTCGACCAATGATCATGCTGCTTGTTATGATCTTCCACGCCAAGATCAAGATCTTTCGAGGAAAGCCAGATTGGGCCTAACCATTGGCCTGGGAATACCTGGATTCATTGGCATCATTGGACTCTTATGTTTGTTGCATCACAGAAAAATGAGACGAGAACAGCGACAACAGTCATCAAGGACAGAAACGGAATTTTCTATCATGAATGCTCGTCACCCTCAAGCTGCCTTAATGGGCCTTGACGGGCCATCCATAGAAAGATATCCAAAAACTGAGGTTGGTGAGAGTGGGCAATTGCCTAGGCCCAATGATACTATTTGCTCAATATGTCTATCTGAGTATCGGCCCAAAGAGGTGATAAGAACCATAACAGAATGCGAACACTATTTTCATGTTGATTGCATTGATGGGTGGCTGAAGATGAATGCTACTTGCCCTTTGTGTAGAAAATTACCAGCAAGATCCTAG 1134 0.4365 MISITGHRRTEANPSDDIDNNKCDINSCGNYTLPIEFPFWIKTEGNNNRCGYQGFDIKCNNQNQPLLNLPESGVFVVKGIEYEEQQVMINDPEECLPRKIMLNRGFSLADSPFQLANGFMYRNYSFYNCPYEPESPVMISCLGSSTSNNVSYSVVAVLSSEPPQRLLNLSSCHFVTWGLAPVPSYIHEDYWTISDVDVQLQWNEPDCRYCLQHGGRCGLLQDSTNDHAACYDLPRQDQDLSRKARLGLTIGLGIPGFIGIIGLLCLLHHRKMRREQRQQSSRTETEFSIMNARHPQAALMGLDGPSIERYPKTEVGESGQLPRPNDTICSICLSEYRPKEVIRTITECEHYFHVDCIDGWLKMNATCPLCRKLPARS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181246g00056 377 Pfam Wall-associated receptor kinase galacturonan-binding 25 91 IPR025287 GO:0030247
Stsc181246g00056 377 SUPERFAMILY RING/U-box 323 373 - -
Stsc181246g00056 377 ProSiteProfiles Zinc finger RING-type profile. 329 371 IPR001841 -
Stsc181246g00056 377 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 373 IPR046948 -
Stsc181246g00056 377 SMART ring_2 329 370 IPR001841 -
Stsc181246g00056 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 375 IPR013083 -
Stsc181246g00056 377 Pfam Ring finger domain 328 371 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181246g00056 Stsc-Chr181246 266754 273687 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181246g00056 27 375 C3H Transcription Factor Family AT2G25410 34.986 5.77e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181246g00056 - - adu:107488400 540.036