Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181246g00055 ATGGCCACCATGCAATATTATTCACTAACACTTGTTGTGTTGATCATTATCATTATTGGGCACGGAAGTGAGGCAAGTGATAATAACTGTGCCGCCCCCGCTACTGCCTCATGCGGAGGATACTACACAGCTCCTATTGAATTCCCATTTTGGATAAAAAACCGAGGCAATAACAACAGTCGATGTGGATACCCAGGTTTCGATATCAACTGTAACACCCATAACCAACCGTTGCTGAACCTCCCGGAATCCGGCGACTTCCTCGTAATAGGAATCGAAAATATAGCTCAAATAGTTGTAATCAACGATCAAGAAGAGTGCATGCCAAGAAGGATCATGCTCAACCGTGGATTCAGCCTCGCAGATTCCCCTTTCCAGTTAGCCGACGGTTACATTTACCAGAACTACTCCTTTTACAACTGTTCGTACGACCCAGGATCACCGATCATGATAGGTTGCTTGGGATCCAGCATCAACTATTCTGTGGCGGCGGTGTTGTCGTCGCAACCTCCTCGAGGGTTGTTGAATTTATCGTCGTGCGAGTTTATTACATGGGGTTTGGCACCTGTTTGGAGTGGTTCACCGTACGAAGAATATCCCACCATGGGTTCCTTGTATGATATACAGTTGCAGTGGAAGGAACCTAACTGCACCGATTGTTTTAATCGTGGTGGACGTTGCGGTTTCCAACCAGATTCTACCAATCATCGTCTTGCTTGCTATGATCTTCCACACCAAGGTTTTACAAGGAAAGAAAAGTTTGGAATAAGCATGGGAGTGGGAATACCTGGACTTATTGGCATCATTGGGCTTATATGTTTGTTGCAACGAAGAAAGAGGCAAGAACAGAGACGACAGTCATCAAGAATAGGAACTGAATTTGCTATCATGAACGTTACTAACCGTCCAGCGGTCTTAATAGGCCTTGATGGGCCATCAATTGAAAGATATCCAAAAACTGAGGTTAGTGAGAGTGGGGGATTGCCCAGGCCCAATGATACCATTTGCTCAATATGTCTACATGAGTATCAGCCCAAAGAAGTGCTGAGGACCATAACAGAGTGTCAGCACTATTTTCACGTTGATTGCATTGATGGGTGGCTGAAGATGAATGCTACCTGCCCTTTGTGTAGAAAATTACCAGCATGA 1149 0.45 MATMQYYSLTLVVLIIIIIGHGSEASDNNCAAPATASCGGYYTAPIEFPFWIKNRGNNNSRCGYPGFDINCNTHNQPLLNLPESGDFLVIGIENIAQIVVINDQEECMPRRIMLNRGFSLADSPFQLADGYIYQNYSFYNCSYDPGSPIMIGCLGSSINYSVAAVLSSQPPRGLLNLSSCEFITWGLAPVWSGSPYEEYPTMGSLYDIQLQWKEPNCTDCFNRGGRCGFQPDSTNHRLACYDLPHQGFTRKEKFGISMGVGIPGLIGIIGLICLLQRRKRQEQRRQSSRIGTEFAIMNVTNRPAVLIGLDGPSIERYPKTEVSESGGLPRPNDTICSICLHEYQPKEVLRTITECQHYFHVDCIDGWLKMNATCPLCRKLPA 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181246g00055 382 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 380 IPR046948 -
Stsc181246g00055 382 SMART ring_2 336 377 IPR001841 -
Stsc181246g00055 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 381 IPR013083 -
Stsc181246g00055 382 SUPERFAMILY RING/U-box 331 379 - -
Stsc181246g00055 382 Pfam Ring finger domain 335 378 IPR001841 -
Stsc181246g00055 382 ProSiteProfiles Zinc finger RING-type profile. 336 378 IPR001841 -
Stsc181246g00055 382 CDD RING-H2_EL5-like 335 378 - -
Stsc181246g00055 382 Pfam Wall-associated receptor kinase galacturonan-binding 37 103 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181246g00055 Stsc-Chr181246 263421 265814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181246g00055 62 382 C3H Transcription Factor Family AT2G25410 33.432 1.59e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181246g00055 - - adu:107488400 487.263