Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181246g00050 ATGGGCAGCAGCGAGATGGATAAAACCCCAAAAGAGAAGGAGTCAAAGACGACTCCACCTGCTTCACAGGAGCAATCTTCAGCCACCAGCACTGGAACAGTTAATCCTGACTGGTCCAGTTTTCAGGCATATTCTCCTATACCTCCACATGGGTTCATGGCATCAAGTCCCCAAGCTGCCCCATATATGTGGGGTGTCCAGCATATTATGCCTCCCTATGGTACTCCAACACATCCCTATGTTGCAATGTATCCCCACGGTGGCATATATGCACATCCATCCATGCCTCCGGGATCTTATCCTTTTAGTCCTTTTCCTATGCCTTCCCCAAATGGTATTGCTGAGGCTTCAGGAAATACTCCTGGCAGCATGGAAGCTGATGGGAAGCCTCCTGAAGTAAAGGAAAAACTGCCAATCAAAAGATCGAAAGGAAGTTTGGGAAGTTTGAACATGATTACAGGGAAAAATAATGAACCTGGTAAAACAGGGACTCCTGCTGCTGGAATTCATTCAAAGAGTGGTGAGAGTGCAAGTGAAGGTAGCAGTGAAGGAAGTGATGCTAATTCTCAGAATGACTCTCAATTGAAATCAGGGGGCAGACAGGATTCTTATGAAGATGAACCATCTCAAAATGGCAGTTCGGTGCATGCTCCTCAAAATGGGGGACTTAATACACCTCATACGGTAGTAAATCAAACCATGTCTGTGATACCTATCACTGCTGCTGGTGCTCCTGGAGCTGTTCCTGGTCCCACAACAAACCTGAATATAGGAATGGATTATTGGGGCACACCAACAGCATCCAACATTCCTGCTCTGCGTGGAAAGGTTCCATCGACTGCAGTTGCTGGGGGGATGGTTGCTGCTGGATCACGAGATAGTGTTCAGTCACAACTTTGGCTACAGGATGAAAGAGAGCTTAAAAGACAAAGGAGGAAGCAATCTAACAGGGAATCTGCTCGAAGATCCAGATTGCGCAAGCAGGCTGAGTGTGATGAGCTAGCTCAGCGTGCTGAGGCATTGAAAGAAGAAAATGCTTCTCTCCGATCAGAAGTAAGTCGGATCAGAAGTGAGTATGAGCAGCTAGCTGCTGAGAATGCAGCTCTCAAGGAGAGACTTGGCGAATTACCTGGGAATGATGATCTTAGGTCCAGAACAATGAATGAGCAGCCTGTGGGTGACGACACACAACAGAGCGGACAGGCAGAGGCCGTGGAGGGTGGTAATTAG 1230 0.4764 MGSSEMDKTPKEKESKTTPPASQEQSSATSTGTVNPDWSSFQAYSPIPPHGFMASSPQAAPYMWGVQHIMPPYGTPTHPYVAMYPHGGIYAHPSMPPGSYPFSPFPMPSPNGIAEASGNTPGSMEADGKPPEVKEKLPIKRSKGSLGSLNMITGKNNEPGKTGTPAAGIHSKSGESASEGSSEGSDANSQNDSQLKSGGRQDSYEDEPSQNGSSVHAPQNGGLNTPHTVVNQTMSVIPITAAGAPGAVPGPTTNLNIGMDYWGTPTASNIPALRGKVPSTAVAGGMVAAGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVSRIRSEYEQLAAENAALKERLGELPGNDDLRSRTMNEQPVGDDTQQSGQAEAVEGGN 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181246g00050 409 Gene3D - 307 361 - -
Stsc181246g00050 409 MobiDBLite consensus disorder prediction 146 160 - -
Stsc181246g00050 409 SMART brlzneu 304 368 IPR004827 GO:0003700|GO:0006355
Stsc181246g00050 409 MobiDBLite consensus disorder prediction 383 409 - -
Stsc181246g00050 409 MobiDBLite consensus disorder prediction 111 227 - -
Stsc181246g00050 409 MobiDBLite consensus disorder prediction 1 46 - -
Stsc181246g00050 409 Coils Coil 324 372 - -
Stsc181246g00050 409 MobiDBLite consensus disorder prediction 169 227 - -
Stsc181246g00050 409 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Stsc181246g00050 409 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 396 IPR044827 GO:0003700|GO:0006355|GO:0043565
Stsc181246g00050 409 SUPERFAMILY Leucine zipper domain 307 362 IPR046347 GO:0003700|GO:0006355
Stsc181246g00050 409 MobiDBLite consensus disorder prediction 370 409 - -
Stsc181246g00050 409 MobiDBLite consensus disorder prediction 306 330 - -
Stsc181246g00050 409 MobiDBLite consensus disorder prediction 1 18 - -
Stsc181246g00050 409 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 306 369 IPR004827 GO:0003700|GO:0006355
Stsc181246g00050 409 Pfam Disordered region downstream of MFMR 135 271 - -
Stsc181246g00050 409 CDD bZIP_plant_GBF1 309 359 IPR045314 GO:0003700|GO:0006355
Stsc181246g00050 409 Pfam bZIP transcription factor 304 366 IPR004827 GO:0003700|GO:0006355
Stsc181246g00050 409 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 311 326 IPR004827 GO:0003700|GO:0006355
Stsc181246g00050 409 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181246g00050 Stsc-Chr181246 241117 246633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181246g00050 1 403 bZIP Transcription Factor Family AT2G35530 63.504 1.37e-169 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc181246g00050 MFMR_assoc 3.1e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181246g00050 K09060 - gmx:100101882 658.677