Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181246g00045 ATGGGTTACGAAGACGATCCGTATCGCGATGAGGACGGAGAACCCTTGATGGATTACGATGACATTCATTCCGATCCCGAGCCGGAGCCCCACCACGACGATGCGCTCCTCGATGATTACGACGACGAAGGGGACGGTGGCGATTGGCCACGCCGTGAGCGGTCGCAGACTCCGGTCTACGATAACGATTCGTCTAAGTCGAAGCCCAGGAAGAGGCTCATCAAGAAGGGCGACTCCGGGAGGCAGTCGGTGGCGCCAGAGCTCGAAGATGAGGTGGCGGAGGAGGATGACGAGCCGAGGTTCGCGAGGGAGGGGTCGGAGGAAGGGAGGAAGAGGAAGAAGGGGAAGGAGGTCGGAGGTGGGAAGAAGGAGAAGAGGCTTAAGGGGGACAAGAGGTTTTCAAGTGGCGGCAGTGGGAAAAGCGGGTCCAAATTTGGGGGATCTAAGAAAGGGTTTGATGGGAAGGGAGGGAAAGATCATGATGGTGAAGTTAAGGAGATGTGGGATACCATTGCTGGAGGTGATTCTGAGGATGATCATGAGGGTGTCAGGAATGTGGATGATGACAACTTCATAGATGACACGGGGGTGGAAGGTGGTGGTTACTATGGAAGTGATGAACCACGTTCTCCTGGTAGTGCTCCCCAGGCGGAGGAAGGTGAAGAAGATGATGAAATTAAGGATCTTTTTAAGATAGGCAAGAAAAAGAAGAAGAATGAAAGAAGTCCTGCAGAAATAGCTTTATTAGTCGAGAATGTCATGGCTGAGCTTGAGGTCACAGCTGAAGAGGATGCTGAACTTAATAGACAGGGGAAGCCTGCCATTANNNNNNNNNNCCTAACAGAAGTCCTCTCAAAGAAACAGCTTCAATTAGAGTTTTTGGACCACGGAGTGCTAACTTTATTGAAGAATTGGCTTGAGCCACTTCCTGATGGAAGCTTGCCAAATATTAACATACGCACAGCAATTTTGAATATTTTGAATGATTTTCCTATTGACCTAGAGCAGTATGATAGAAGAGAACAGCTGAAGAAGAGTGGTCTTGGAAAGGTTATCATGTTCTTATCAAAGTCTGACGAAGAAATCAATGTAAATAGAAAACTAGCCAAGGAACTGGTTGACAAATGGAGCCGACCTATATTTAATAAGAGTACGCGGTTTGAAGACATGAGAACTGCTGAGGACGACAGGATTCCATACAGGAGGCCAACTGTTAAAAAGCCGGCAAATAAAGCAGCAGGGATGGAATCTAGAGATGGTGATCTTGATTTGGAATTTTCACAGCCTAGGTCTGGACAGTCTTCTTCAAGGCAACATGCATCAAGGCCAGAAGCAACACCTTTGGATTTTGTGATACGTCCACAGTCTAAAATTGATCCAGAAGAAGTTAGAGCACGAGCAAAAGCTGCTGCACAAGATCAGCAGCGAATGAAGATGAATAAGAAATTGCAGCAGTTGAGAGCACCGAAGAAGAAGCAGCTTCAAGCTACAAAACTAAGTGTGGAAGGTCGTGGCATGATCAAATATTTGTAG 1533 0.471 MGYEDDPYRDEDGEPLMDYDDIHSDPEPEPHHDDALLDDYDDEGDGGDWPRRERSQTPVYDNDSSKSKPRKRLIKKGDSGRQSVAPELEDEVAEEDDEPRFAREGSEEGRKRKKGKEVGGGKKEKRLKGDKRFSSGGSGKSGSKFGGSKKGFDGKGGKDHDGEVKEMWDTIAGGDSEDDHEGVRNVDDDNFIDDTGVEGGGYYGSDEPRSPGSAPQAEEGEEDDEIKDLFKIGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQGKPAIXXXXLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILNILNDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEEINVNRKLAKELVDKWSRPIFNKSTRFEDMRTAEDDRIPYRRPTVKKPANKAAGMESRDGDLDLEFSQPRSGQSSSRQHASRPEATPLDFVIRPQSKIDPEEVRARAKAAAQDQQRMKMNKKLQQLRAPKKKQLQATKLSVEGRGMIKYL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181246g00045 510 Coils Coil 250 270 - -
Stsc181246g00045 510 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 295 383 IPR035441 -
Stsc181246g00045 510 ProSiteProfiles TFIIS N-terminal domain profile. 300 383 IPR017923 -
Stsc181246g00045 510 Pfam TFIIS helical bundle-like domain 326 380 IPR017923 -
Stsc181246g00045 510 MobiDBLite consensus disorder prediction 45 68 - -
Stsc181246g00045 510 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 243 386 IPR035441 -
Stsc181246g00045 510 MobiDBLite consensus disorder prediction 427 442 - -
Stsc181246g00045 510 MobiDBLite consensus disorder prediction 394 460 - -
Stsc181246g00045 510 MobiDBLite consensus disorder prediction 1 228 - -
Stsc181246g00045 510 MobiDBLite consensus disorder prediction 151 191 - -
Stsc181246g00045 510 PANTHER PROTEIN IWS1 HOMOLOG 1 1 510 IPR044204 GO:0009742|GO:0032784
Stsc181246g00045 510 MobiDBLite consensus disorder prediction 1 18 - -
Stsc181246g00045 510 MobiDBLite consensus disorder prediction 19 37 - -
Stsc181246g00045 510 MobiDBLite consensus disorder prediction 98 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181246g00045 Stsc-Chr181246 226952 231166 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Stsc181246g00045 Med26 3.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181246g00045 K17498 - gmx:100801805 717.998