Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181246g00044 ATGGATTACGATGACATTCATTCCGATCCCGAGCCGGAGCCCCACCACGACGATGCGCTCCTCGATGATTACGACGACGAAGGGGACGGTGGCGATTGGCCACGCCGTGAGCGGTCGCAGACTCCGGTCTACGATAACGATTCGTCTAAGTCGAAGCCCAGGAAGAGGCTCATCAAGAAGGGCGACTCCGGGAGGCAGTCGGTGGCGCCAGAGCTCGAAGATGAGGTGGCGGAGGAGGATGACGAGCCGAGGTTCGCGAGGGAGGGGTCGGAGGAAGGGAGGAAGAGGAAGAAGGGGAAGGAGGTCGGAGGTGGGAAGAAGGAGAAGAGGCTTAAGGGGGACAAGAGGTTTTCAAGTGGCGGCAGTGGGAAAAGCGGGTCCAAATTTGGGGGATCTAAGAAAGGGTTTGATGGGAAGGGAGGGAAAGATCATGATGGTGAAGTTAAGGAGATGTGGGATACCATTGCTGGAGGTGATTCTGAGGATGATCATGAGGGTGTCAGGAATGTGGATGATGACAACTTCATAGATGACACGGGGGTGGAAGGTGGTGGTTACTATGGAAGTGATGAACCACGTTCTCCTGGTAGTGCTCCCCAGGCGGAGGAAGGTGAAGAAGATGATGAAATTAAGGATCTTTTTAAGATAGGCAAGAAAAAGAAGAAGAATGAAAGAAGTCCTGCAGAAATAGCTTTATTAGTCGAGAATGTCATGGCTGAGCTTGAGGTCACAGCTGAAGAGGATGCTGAACTTAATAGACAGGGGAAGCCTGCCATTANNNNNNNNNNCCTAACAGAAGTCCTCTCAAAGAAACAGCTTCAATTAGAGTTTTTGGACCACGGAGTGCTAACTTTATTGAAGAATTGGCTTGAGCCACTTCCTGATGGAAGCTTGCCAAATATTAACATACGCACAGCAATTTTGAATATTTTGAATGATTTTCCTATTGACCTAGAGCAGTATGATAGAAGAGAACAGCTGAAGAAGAGTGGTCTTGGAAAGGTTATCATGTTCTTATCAAAGTCTGACGAAGAAATCAATGTAAATAGAAAACTAGCCAAGGAACTGGTTGACAAATGGAGCCGACCTATATTTAATAAGAGTACGCGGTTTGAAGACATGAGAACTGCTGAGGACGACAGGATTCCATACAGGAGGCCAACTGTTAAAAAGCCGGCAAATAAAGCAGCAGGGATGGAATCTAGAGATGGTGATCTTGATTTGGAATTTTCACAGCCTAGGTCTGGACAGTCTTCTTCAAGGCAACATGCATCAAGGCCAGAAGCAACACCTTTGGATTTTGTGATACGTCCACAGTCTAAAATTGATCCAGAAGAAGTTAGAGCACGAGCAAAAGCTGCTGCACAAGATCAGCAGCGAATGAAGATGAATAAGAAATTGCAGCAGTTGAGAGCACCGAAGAAGAAGCAGCTTCAAGCTACAAAACTAAGTGTGGAAGGTCGTGGCATGATCAAATATTTGTAG 1485 0.4687 MDYDDIHSDPEPEPHHDDALLDDYDDEGDGGDWPRRERSQTPVYDNDSSKSKPRKRLIKKGDSGRQSVAPELEDEVAEEDDEPRFAREGSEEGRKRKKGKEVGGGKKEKRLKGDKRFSSGGSGKSGSKFGGSKKGFDGKGGKDHDGEVKEMWDTIAGGDSEDDHEGVRNVDDDNFIDDTGVEGGGYYGSDEPRSPGSAPQAEEGEEDDEIKDLFKIGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQGKPAIXXXXLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILNILNDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEEINVNRKLAKELVDKWSRPIFNKSTRFEDMRTAEDDRIPYRRPTVKKPANKAAGMESRDGDLDLEFSQPRSGQSSSRQHASRPEATPLDFVIRPQSKIDPEEVRARAKAAAQDQQRMKMNKKLQQLRAPKKKQLQATKLSVEGRGMIKYL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181246g00044 494 MobiDBLite consensus disorder prediction 1 212 - -
Stsc181246g00044 494 PANTHER PROTEIN IWS1 HOMOLOG 1 2 494 IPR044204 GO:0009742|GO:0032784
Stsc181246g00044 494 Coils Coil 234 254 - -
Stsc181246g00044 494 MobiDBLite consensus disorder prediction 29 52 - -
Stsc181246g00044 494 ProSiteProfiles TFIIS N-terminal domain profile. 284 367 IPR017923 -
Stsc181246g00044 494 Pfam TFIIS helical bundle-like domain 310 364 IPR017923 -
Stsc181246g00044 494 MobiDBLite consensus disorder prediction 1 21 - -
Stsc181246g00044 494 MobiDBLite consensus disorder prediction 411 426 - -
Stsc181246g00044 494 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 279 367 IPR035441 -
Stsc181246g00044 494 MobiDBLite consensus disorder prediction 378 444 - -
Stsc181246g00044 494 MobiDBLite consensus disorder prediction 135 175 - -
Stsc181246g00044 494 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 227 370 IPR035441 -
Stsc181246g00044 494 MobiDBLite consensus disorder prediction 82 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181246g00044 Stsc-Chr181246 223167 231093 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Stsc181246g00044 Med26 3.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181246g00044 K17498 - gmx:100801805 684.1