Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181246g00033 ATGTCTGCCTTACTTCAAGAAGAAGTGAATCTGCAAAAAGGGGTTCATCAAGAAGTTCAGTACATCAAAGATGAACTGGAACGCCACATGGCCATCTTAAGGGTGGCTGATGCTCTGGAAGACAAAGATCATGAACTCAAAGTATGGCTTCAACGTGTCAGAAACATTGCTCTTGATATGGAAGATGCTATAGACGAATTCAATTATCAAGACAACAAGTCATCATCTTCTTTCGCCAAGATCAGGAACATGAAAGCTCGCCATGAGATTGCTTCGGAGATACAACAAATCAAATCAAGACTTGACTTCATCTCCAAGGAACGTCCCAACATCTATGGGGTAGGCTCCAGGTCCAGGTCGAGTCCACGGTTGCCATCGAATATTGACTGCCAGAAAGATGCACTTCTGCTTGAGGAAGCTGATTTAGTAGGAATTGACAAACCCAAGAAGCAGCTATGTGATTTGCTTTTCACCAATGAAGCAGGCCGTTTTGTGATTCCCATTCATGGGATGGGAGGCTTGGGGAAAACTACATTGGCAAAGCAAATCTATGATGATGCCAAAGTGAAGAATCGTTTCAAGATTCATGCTTGGGTTAGTATCTCTCATCCTTTCCAAAATGAAGAGCTCCTCAAAGACCTTGTTCACCAGCTCCATAATGTCATTGGAAAACCAGCACCTGAAGAAGTTGGACAGATGAGAAGTGAGAAGCTGAAAGAGGTGATCAAGAATCTGCTTCAGCAAAGCAGGTACCTCATTGTGCTGGATGATGTATGGCATGTAAACGTCTGGGATTCAGTCAAACTTGCTTTGCCTAATAACAACAGAGGCAGTAGAGTAATGCTCACCACTCGCAACAAAAACGTAGCACTGTCTTCCTGTGCCGAATTGGGTAAGGACTTTCACCCTGAATTCTTACCTGAACAAGAAGCCTGGTCTCTCTTCTGTAGGAAAACATTTCAGGACAACACATGCCCTCCTCATCTTGAAGAAGTTTGTAGAAAAATCTTAAAGATGTGTGGGGGGTTGCCACTGGCAATTGTAGCAATTGGTGGTGCTTTGTCCACAACAAACAAGGCAAACATAGAAGAATGGCAGATGGTTTATAGAAGCTTTGGGTCTGAAATTGAAGGCAATGACAAACTGGAGAATATGAACAAAGTGCTTTCCTTGAGTTTCAATGAATTACCTCACTATCTCAAGTCTTGTTTGATGTACCTAAGCATCTTCCCTGAATTTCATGCTATCGAGCATATGAGGCTGATTCGTTTATGGATAGCAGAAGGGTTTGTCATTGGAGAAGGTGGCAAGACTCTGGAGGAAGTTGCTGAAAGCTACCTCAAGGAGCTCTTGGACAGAAGTCTGCTGCAAGTGGTAGAAAAAAACAGCGATGGCAGGATGAAGACTTGTCGAATGCATGATGTTTTAAGGGAAATCATAAATTTGAAGTCAAAGGATCAGAACTTTGCAACAATAGCCAAAGAACAATCCATACTCTGGCCGGAGAGAGTTCGACGCCTATCAATTATCAACACCACAAATCACATACAGCAAAATAGGACAACATTCCAACTTCGGTCTCTGCTGATGTTTGCCTTATCAGACTCACTTGATCATTTCTCTATACAAGCAGTATGTCCCACTGGTTATAAGTTGCTTAGAGTGCTAGATTTGCAGGATGCACCTTTGGAGGTTTTTCCTGATGGAATTGTTAACCTTTTCCTTCTTAAGTATCTAAGTTTAAGGAATACAAAGGTGAAAAGAATTCCCGGTTCCATTAAGAAGCTGAGACAATTGGAGACTTTGGATCTTAAGCACTCCCACGTCACTGAATTGCCAGTTGAAATTGTTGAGCTGCTCCAGCTGCGCCATCTCCTTGTGTACCGCTATGAGGTTGAAACTTACGCATATTTCCACTCAAGGCATGGATTCAAGTTGGCTGCCCCAATAGGAAACATGCAATCTTTGCAGAAGCTGTGTTTTATAAAGGCAGACCAAGGAGGTAAAGCCTTGATGGTTCAGCTAGAAAGACTTACACAACTTAGGAGGCTTGGAATTAGAAGGATGAGGGAAGAAGATGGAGCTGCTTTATGTTCTGCCATTGAGAAGATGATCAATCTCCAATCGCTGTCAGTAACGGCGATTGAAGATGATATGATAATTGATATTCACAAAATTTCTACGCCGCCTCAGTTCCTTCAACGATTATACTTGAGTGGTCGTTTAGACAAGTTTCCACAATGGATTAGCAGCCTCAAGAACTTGGCCAAAGTGCATCTAAAATGGAGCAATCTAAAGGAGGATCCTCTGGTATATCTTCAAGACTTGCCAAATCTAAGGCATCTTGAGCTTCTTCATGTGTATGCTGGCGATACACTGCATTTCAGGGCTAAAGGGTTCCCAAGTCTGAAGGTTCTTGGCCTTGATGATTTAGATGAATTGAAACACATGATAGTGGAGGAGGGAGCAATGCCTGGTCTCAAGAAGCTGATCATGCAGAGATGCAAGTCATTGAAGCAGGCACCAATAGGCATTGAACATCTAAGTAAATTGAAGACAATAGAGTTCTTTGACATGCCTGAAGAATTGATTACATCACTACTTCCCAATGGAGGCCAAGATAATTGGAGAGTGCAACATGTCCCAGCTGTTTATGCCTCATACTGGAGAGATCGTGATTGGGATGTTTACTCACTGGAGACTTTTGCAGAGAGAGCCTATGACACAAGTCATGATGCTGCAATAAGTAGTCATGAAATCCGCACATTTTGGAAGGTTTAA 2781 0.425 MSALLQEEVNLQKGVHQEVQYIKDELERHMAILRVADALEDKDHELKVWLQRVRNIALDMEDAIDEFNYQDNKSSSSFAKIRNMKARHEIASEIQQIKSRLDFISKERPNIYGVGSRSRSSPRLPSNIDCQKDALLLEEADLVGIDKPKKQLCDLLFTNEAGRFVIPIHGMGGLGKTTLAKQIYDDAKVKNRFKIHAWVSISHPFQNEELLKDLVHQLHNVIGKPAPEEVGQMRSEKLKEVIKNLLQQSRYLIVLDDVWHVNVWDSVKLALPNNNRGSRVMLTTRNKNVALSSCAELGKDFHPEFLPEQEAWSLFCRKTFQDNTCPPHLEEVCRKILKMCGGLPLAIVAIGGALSTTNKANIEEWQMVYRSFGSEIEGNDKLENMNKVLSLSFNELPHYLKSCLMYLSIFPEFHAIEHMRLIRLWIAEGFVIGEGGKTLEEVAESYLKELLDRSLLQVVEKNSDGRMKTCRMHDVLREIINLKSKDQNFATIAKEQSILWPERVRRLSIINTTNHIQQNRTTFQLRSLLMFALSDSLDHFSIQAVCPTGYKLLRVLDLQDAPLEVFPDGIVNLFLLKYLSLRNTKVKRIPGSIKKLRQLETLDLKHSHVTELPVEIVELLQLRHLLVYRYEVETYAYFHSRHGFKLAAPIGNMQSLQKLCFIKADQGGKALMVQLERLTQLRRLGIRRMREEDGAALCSAIEKMINLQSLSVTAIEDDMIIDIHKISTPPQFLQRLYLSGRLDKFPQWISSLKNLAKVHLKWSNLKEDPLVYLQDLPNLRHLELLHVYAGDTLHFRAKGFPSLKVLGLDDLDELKHMIVEEGAMPGLKKLIMQRCKSLKQAPIGIEHLSKLKTIEFFDMPEELITSLLPNGGQDNWRVQHVPAVYASYWRDRDWDVYSLETFAERAYDTSHDAAISSHEIRTFWKV 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181246g00033 926 Pfam Rx N-terminal domain 3 79 IPR041118 -
Stsc181246g00033 926 Gene3D - 393 483 IPR036388 -
Stsc181246g00033 926 Pfam NB-ARC domain 147 394 IPR002182 GO:0043531
Stsc181246g00033 926 FunFam Probable disease resistance protein At1g63360 393 482 - -
Stsc181246g00033 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 407 IPR027417 -
Stsc181246g00033 926 Gene3D Ribonuclease Inhibitor 514 878 IPR032675 -
Stsc181246g00033 926 Gene3D - 306 392 IPR042197 -
Stsc181246g00033 926 PANTHER DISEASE RESISTANCE PROTEIN RP 22 837 IPR044974 GO:0006952
Stsc181246g00033 926 SUPERFAMILY L domain-like 471 863 - -
Stsc181246g00033 926 Gene3D - 131 296 IPR027417 -
Stsc181246g00033 926 FunFam Probable disease resistance protein At1g61300 129 297 - -
Stsc181246g00033 926 Gene3D - 1 91 - -
Stsc181246g00033 926 PRINTS Disease resistance protein signature 245 259 - -
Stsc181246g00033 926 PRINTS Disease resistance protein signature 165 180 - -
Stsc181246g00033 926 PRINTS Disease resistance protein signature 594 610 - -
Stsc181246g00033 926 PRINTS Disease resistance protein signature 340 354 - -
Stsc181246g00033 926 CDD RX-CC_like 4 106 IPR038005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181246g00033 Stsc-Chr181246 163411 166290 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181246g00033 165 627 WRKY Transcription Factor Family AT5G45050 21.850 2.72e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181246g00033 K13457 - gmx:100305458 1425.22