Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181246g00031 ATGGGTCGCAAAGTCGCAGCCGAACCAGTTGCCGTGCCACCTCCAGCAGAAGAAGCCCCAAACAGCCCTGAACTCAAAGCCGAGAAGAAGAAGAAGAAAAAGCACAAGAACAAAGACAAACACAATCAAGAAGAAAACGGAACCGCTACGACCAAAAGAAAGCTCGACGAGATCCAGCCTCAAAATGACGCCGAATCGGACAAGAAGAAGAAGAAGAAGAATAAGCACAAACGCGATTCCGGAGAGAACGTGGAGGAAATCAAAGCTGAATGCGTTGATGGAGGTGGAGGTGGCGGCGGTGGAGATGAGTCGGTTACCGACGGGCACGTGGTGGTTACAGGGAAGAATGCCGGAGAGGCGAAGTACGCGCCGGTGAAGAGCTTCGCCGGTTCGGGGCTGCCGGAAAACGTTTTGGAGTGCTGCAAGGGCTTCGAGAAGCCGTCGCCGATTCAGTCACGGGCATGGCCTTTCTTGTTGGACGGTCGTGATCTGATCGGAATCGCTGCAACTGGTTCAGGGAAGACGCTGGCGTTTGGGATTCCTGCCGTTATGCACGTTCTGAGTAAGCGGAAGAATAAAGCGCTGAAGGGTCGGAACCCTCTTTGCCTCATGCTATCTCCTACCAGGGAGCTAGCTCAACAAATTTCAGATGTTATGTGTGATGCAGGTAGATCTTGTGGTGTAGAGTCAGTTTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCGCTTCACTGAAATCTGGCGTTGACATTGTCATTGGAACTCCCGGTCGTATACAGGATCTGATAGAAATGGGTGTGTGTAGCCTAAAAGAAGTATCTTTTGTGGTGCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAGTAGTTCGTTCTATACTGGGTCAGACATGCTCTGTTCGTCAAATGGTGATGTTTAGCGCTACGTGGCCCTTGCCGGTTCATCAGTTAGCACAGGAGTTCATGGATCCCAACCCCATAAAAGTTGTTGTAGGTTCAGAAGATTTAGCTGCAAATCATGATGTCATGCAGATAGTTGAGGTCCTGGATGATCGTGCACGTGATAAGCGACTAATTGCATTACTGGAGAAATACCACAAATCTCAGAGGAACCGAGTATTGATCTTTGTTTTGTACAAAATGGAAACCACACGAGTTGAAAGGATGCTTCAACAAGGTGGTTGGAAGGTTGTGTCAATACATGGAGACAAAGCACAACATGATCGTACAAAGTCACTTTCATTATTCAAGAACGGGAGCTGTCCTTTAATGATTGCTACTGATGTGGCTGCACGAGGATTAGACATTCCAGATGTTGAAGTTGTCATCAACTATAGTTTTCCTCTAACTACAGAAGATTATGTTCATAGAATTGGTCGGACTGGACGAGCTGGTAAAAAGGGTGTTGCCCATACGTTCTTCACAATGCAGAATAAGGGTCTTGCTGGGGAGCTTGTGAATGTATTAAGAGAAGCTGGGCAAGTTGTGCCAGATGCCCTTTTGAAATTTGGCACACATGTAAAGAAAAAGGAATCCAAGCTTTATGGGGCTCACTTTAAGGAAATTACCGCTGATGCACCAAAGTCTCAAAAAATTACATTTGACAACTCTGATGATGAAGAATAA 1638 0.467 MGRKVAAEPVAVPPPAEEAPNSPELKAEKKKKKKHKNKDKHNQEENGTATTKRKLDEIQPQNDAESDKKKKKKNKHKRDSGENVEEIKAECVDGGGGGGGGDESVTDGHVVVTGKNAGEAKYAPVKSFAGSGLPENVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAVMHVLSKRKNKALKGRNPLCLMLSPTRELAQQISDVMCDAGRSCGVESVCLYGGTSKGPQIASLKSGVDIVIGTPGRIQDLIEMGVCSLKEVSFVVLDEADRMLDMGFEQVVRSILGQTCSVRQMVMFSATWPLPVHQLAQEFMDPNPIKVVVGSEDLAANHDVMQIVEVLDDRARDKRLIALLEKYHKSQRNRVLIFVLYKMETTRVERMLQQGGWKVVSIHGDKAQHDRTKSLSLFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTMQNKGLAGELVNVLREAGQVVPDALLKFGTHVKKKESKLYGAHFKEITADAPKSQKITFDNSDDEE 545
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc181246g00031 545 FunFam ATP-dependent RNA helicase RhlB 335 512 - -
Stsc181246g00031 545 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 126 152 IPR014014 GO:0003724
Stsc181246g00031 545 Pfam DEAD/DEAH box helicase 149 318 IPR011545 GO:0003676|GO:0005524
Stsc181246g00031 545 MobiDBLite consensus disorder prediction 39 69 - -
Stsc181246g00031 545 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 155 332 IPR014001 -
Stsc181246g00031 545 CDD DEADc 142 333 - -
Stsc181246g00031 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 482 IPR027417 -
Stsc181246g00031 545 Gene3D - 102 336 IPR027417 -
Stsc181246g00031 545 CDD SF2_C_DEAD 346 478 - -
Stsc181246g00031 545 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 61 504 - -
Stsc181246g00031 545 MobiDBLite consensus disorder prediction 1 102 - -
Stsc181246g00031 545 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 361 508 IPR001650 -
Stsc181246g00031 545 SMART helicmild6 388 469 IPR001650 -
Stsc181246g00031 545 SMART ultradead3 143 349 IPR014001 -
Stsc181246g00031 545 Gene3D - 337 511 IPR027417 -
Stsc181246g00031 545 Pfam Helicase conserved C-terminal domain 360 469 IPR001650 -
Stsc181246g00031 545 Coils Coil 26 46 - -
Stsc181246g00031 545 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 278 286 IPR000629 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc181246g00031 Stsc-Chr181246 151962 156747 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181246g00031 124 477 Eukaryotic Initiation Factors Gene Family AT3G19760 34.358 2.40e-56 192
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181246g00031 K14811 - gmx:100305353 860.136