Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc181246g00031 | ATGGGTCGCAAAGTCGCAGCCGAACCAGTTGCCGTGCCACCTCCAGCAGAAGAAGCCCCAAACAGCCCTGAACTCAAAGCCGAGAAGAAGAAGAAGAAAAAGCACAAGAACAAAGACAAACACAATCAAGAAGAAAACGGAACCGCTACGACCAAAAGAAAGCTCGACGAGATCCAGCCTCAAAATGACGCCGAATCGGACAAGAAGAAGAAGAAGAAGAATAAGCACAAACGCGATTCCGGAGAGAACGTGGAGGAAATCAAAGCTGAATGCGTTGATGGAGGTGGAGGTGGCGGCGGTGGAGATGAGTCGGTTACCGACGGGCACGTGGTGGTTACAGGGAAGAATGCCGGAGAGGCGAAGTACGCGCCGGTGAAGAGCTTCGCCGGTTCGGGGCTGCCGGAAAACGTTTTGGAGTGCTGCAAGGGCTTCGAGAAGCCGTCGCCGATTCAGTCACGGGCATGGCCTTTCTTGTTGGACGGTCGTGATCTGATCGGAATCGCTGCAACTGGTTCAGGGAAGACGCTGGCGTTTGGGATTCCTGCCGTTATGCACGTTCTGAGTAAGCGGAAGAATAAAGCGCTGAAGGGTCGGAACCCTCTTTGCCTCATGCTATCTCCTACCAGGGAGCTAGCTCAACAAATTTCAGATGTTATGTGTGATGCAGGTAGATCTTGTGGTGTAGAGTCAGTTTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCGCTTCACTGAAATCTGGCGTTGACATTGTCATTGGAACTCCCGGTCGTATACAGGATCTGATAGAAATGGGTGTGTGTAGCCTAAAAGAAGTATCTTTTGTGGTGCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAGTAGTTCGTTCTATACTGGGTCAGACATGCTCTGTTCGTCAAATGGTGATGTTTAGCGCTACGTGGCCCTTGCCGGTTCATCAGTTAGCACAGGAGTTCATGGATCCCAACCCCATAAAAGTTGTTGTAGGTTCAGAAGATTTAGCTGCAAATCATGATGTCATGCAGATAGTTGAGGTCCTGGATGATCGTGCACGTGATAAGCGACTAATTGCATTACTGGAGAAATACCACAAATCTCAGAGGAACCGAGTATTGATCTTTGTTTTGTACAAAATGGAAACCACACGAGTTGAAAGGATGCTTCAACAAGGTGGTTGGAAGGTTGTGTCAATACATGGAGACAAAGCACAACATGATCGTACAAAGTCACTTTCATTATTCAAGAACGGGAGCTGTCCTTTAATGATTGCTACTGATGTGGCTGCACGAGGATTAGACATTCCAGATGTTGAAGTTGTCATCAACTATAGTTTTCCTCTAACTACAGAAGATTATGTTCATAGAATTGGTCGGACTGGACGAGCTGGTAAAAAGGGTGTTGCCCATACGTTCTTCACAATGCAGAATAAGGGTCTTGCTGGGGAGCTTGTGAATGTATTAAGAGAAGCTGGGCAAGTTGTGCCAGATGCCCTTTTGAAATTTGGCACACATGTAAAGAAAAAGGAATCCAAGCTTTATGGGGCTCACTTTAAGGAAATTACCGCTGATGCACCAAAGTCTCAAAAAATTACATTTGACAACTCTGATGATGAAGAATAA | 1638 | 0.467 | MGRKVAAEPVAVPPPAEEAPNSPELKAEKKKKKKHKNKDKHNQEENGTATTKRKLDEIQPQNDAESDKKKKKKNKHKRDSGENVEEIKAECVDGGGGGGGGDESVTDGHVVVTGKNAGEAKYAPVKSFAGSGLPENVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAVMHVLSKRKNKALKGRNPLCLMLSPTRELAQQISDVMCDAGRSCGVESVCLYGGTSKGPQIASLKSGVDIVIGTPGRIQDLIEMGVCSLKEVSFVVLDEADRMLDMGFEQVVRSILGQTCSVRQMVMFSATWPLPVHQLAQEFMDPNPIKVVVGSEDLAANHDVMQIVEVLDDRARDKRLIALLEKYHKSQRNRVLIFVLYKMETTRVERMLQQGGWKVVSIHGDKAQHDRTKSLSLFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTMQNKGLAGELVNVLREAGQVVPDALLKFGTHVKKKESKLYGAHFKEITADAPKSQKITFDNSDDEE | 545 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc181246g00031 | 545 | FunFam | ATP-dependent RNA helicase RhlB | 335 | 512 | - | - | |
| Stsc181246g00031 | 545 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 126 | 152 | IPR014014 | GO:0003724 | |
| Stsc181246g00031 | 545 | Pfam | DEAD/DEAH box helicase | 149 | 318 | IPR011545 | GO:0003676|GO:0005524 | |
| Stsc181246g00031 | 545 | MobiDBLite | consensus disorder prediction | 39 | 69 | - | - | |
| Stsc181246g00031 | 545 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 155 | 332 | IPR014001 | - | |
| Stsc181246g00031 | 545 | CDD | DEADc | 142 | 333 | - | - | |
| Stsc181246g00031 | 545 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 199 | 482 | IPR027417 | - | |
| Stsc181246g00031 | 545 | Gene3D | - | 102 | 336 | IPR027417 | - | |
| Stsc181246g00031 | 545 | CDD | SF2_C_DEAD | 346 | 478 | - | - | |
| Stsc181246g00031 | 545 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 61 | 504 | - | - | |
| Stsc181246g00031 | 545 | MobiDBLite | consensus disorder prediction | 1 | 102 | - | - | |
| Stsc181246g00031 | 545 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 361 | 508 | IPR001650 | - | |
| Stsc181246g00031 | 545 | SMART | helicmild6 | 388 | 469 | IPR001650 | - | |
| Stsc181246g00031 | 545 | SMART | ultradead3 | 143 | 349 | IPR014001 | - | |
| Stsc181246g00031 | 545 | Gene3D | - | 337 | 511 | IPR027417 | - | |
| Stsc181246g00031 | 545 | Pfam | Helicase conserved C-terminal domain | 360 | 469 | IPR001650 | - | |
| Stsc181246g00031 | 545 | Coils | Coil | 26 | 46 | - | - | |
| Stsc181246g00031 | 545 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 278 | 286 | IPR000629 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc181246g00031 | Stsc-Chr181246 | 151962 | 156747 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc181246g00031 | 124 | 477 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 34.358 | 2.40e-56 | 192 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc181246g00031 | K14811 | - | gmx:100305353 | 860.136 |