Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181246g00028 ATGGCAGCTTGTACTGTCTACTCCACACAATGTTTCAACACAATCTCATCAACACCATCACCAAAAACACACTTAGCATTCCACCAAAGACAAGTAGTGTTCTTCACAACAACAACCAGTAACAAGAGAAGCAGCAGCAGCAAGAGAAGTGGCAGCGTGATAACATGCGCTGCCGGAGACACGGTGGTGATTGGTCTTGCCGCAGACTCAGGCTGCGGCAAGAGCACCTTCATGAGGAGGCTGACCAGTGTGTTCGGGGGCGCCGCGGAGCCGCCAAAAGGCGGAAACCCGGACTCGAACACACTGATCAGTGACACAACGACTGTGATATGCTTGGATGATTACCATTCATTGGATAGAACTGGGAGGAAAGAGAAGGGTGTGACTGCTCTTGACCCAAGAGCCAACGATTTTGACCTGATGTATGAACAAGTTAAGGCTCTTAAGGATGGAATTGCTGTTGAGAAACCAATCTACAACCATGTCACTGGTCTCTTGGATCCACCTGAACTCATCAAACCTCCCAAAATCTTGGTCATTGAAGGTTTGCATCCAATGTTTGATTCTCGGGTCAGAGATCTGTTGGACTTCAGCATCTACTTAGACATTAGCAATGAGGTCAAATTCGCATGGAAAATTCAGAGAGACATGGCAGAGCGTGGACACAGTCTTGAAAGCATCAAGGCTAGCATTGAAGCAAGGAAGCCTGATTTTGATGCTTATATTGATCCTCAAAAGCAATATGCAGATGCAGTGATAGAAGTGTTGCCAACTCAGCTGATCCCAGATGACAATGAAGGCAAGATTCTAAGAGTGAGGCTCATTCAGAAAGAAGGAGTCAAGCACTTTAGCCCTGTTTACTTGTTTGATGATGGCTCCACCATTTCTTGGATACCATGTGGAAGGAAGCTTACATGCTCTTACCCTGGCATCAAATTCTTCTATGGTCCTGATTCTTACTTTGGAAATGAGGTGTCAGTTGTAGAAATGGATGGTCAATTTGACAGACTAGATGAACTAATATATGTAGAGAGCCATCTAAGCAACCTGTCCACAAAATTCTATGGAGAAGTGACTCAACAGATGTTGAAGCATGCTGACTTCCCTGGAAGCAACAATGGCACTGGTCTCTTCCAAACCATTGTTGGTCTCAAGATTAGAGAGTTGTATGAACAGATTGTAGCCTCCAAGACTGAGGCTCCTGTAGGAGCAGCTAAGGCTTAA 1224 0.4534 MAACTVYSTQCFNTISSTPSPKTHLAFHQRQVVFFTTTTSNKRSSSSKRSGSVITCAAGDTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMFDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVKHFSPVYLFDDGSTISWIPCGRKLTCSYPGIKFFYGPDSYFGNEVSVVEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRELYEQIVASKTEAPVGAAKA 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181246g00028 407 Gene3D - 59 292 IPR027417 -
Stsc181246g00028 407 FunFam Phosphoribulokinase 58 288 - -
Stsc181246g00028 407 PANTHER URIDINE KINASE 46 298 - -
Stsc181246g00028 407 Pfam Phosphoribulokinase / Uridine kinase family 63 261 IPR006083 GO:0005524|GO:0016301
Stsc181246g00028 407 PRINTS Phosphoribulokinase family signature 212 229 IPR006082 GO:0005524|GO:0005975|GO:0008974
Stsc181246g00028 407 PRINTS Phosphoribulokinase family signature 177 195 IPR006082 GO:0005524|GO:0005975|GO:0008974
Stsc181246g00028 407 PRINTS Phosphoribulokinase family signature 230 253 IPR006082 GO:0005524|GO:0005975|GO:0008974
Stsc181246g00028 407 PRINTS Phosphoribulokinase family signature 68 85 IPR006082 GO:0005524|GO:0005975|GO:0008974
Stsc181246g00028 407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 332 IPR027417 -
Stsc181246g00028 407 CDD PRK 63 352 - -
Stsc181246g00028 407 ProSitePatterns Phosphoribulokinase signature. 212 225 IPR006082 GO:0005524|GO:0005975|GO:0008974
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181246g00028 Stsc-Chr181246 136222 138943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181246g00028 115 289 PRT Gene Family AT3G27440 26.966 7.24e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181246g00028 K00855 - gmx:100777515 720.694