Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181246g00025 ATGGCTGCAAACGTGAACTGTGACATGCCACATAACAGAATAAGCACCACTCTCATCACGTACCCTCATTGGTATTCACCCAAAAATGGAATTTACCGAAGCAAACACCCCGCTTTGGACCTTCCCAAAGACCCTTTTTTTGACCTTGTTTCCTTCGTCTTTTCCCACCGCCATAATGGGGTTTCAGCCCTTGTTGATTCCTCAACTGGGTCTTCCATTTCTTACTCAAAGTTGCAACCTTTGGTCAAATCCATGGCCTATGGTCTTCACAAGATGGGTGTCTCACAAGGCGACGTTGTTCTTCTTTTGCTTCCAAATTCCATTTACTATCCCATTGTGTTCATGAGTGTTCTGTGTTTAGGTGCTGTTGTTGCACCGTTGAACCCTCTGAGCACTATCTCAGAGATACAAAAACAAATAAAAGATTGTGGTGTGAGTTTTGCTTTCACTGTGCCTGAAAATTTCAAGAAACTAGAACCATTAGGAATTCCCATTGTTGCTGTGCCAGAAAATGAGGAGGGTTTGAAGCTTGATTGTTTCTCCTGTTTTAGTAACATGATGATTTCTGGTGAATTTGGTTTCTATATGAGGCCAGTGATTCAACAGGATGACACTGCTGCAATATTGTATTCTTCAGGGACAACTGGGGTGAGCAAAGGAGTTGTTCTAACACATAAGAACCTTATTTCTATGGTTGAGCTTTTTGTGAGGTTTGAAGCTTCTCAATATGAATACTCTTGCTTGAACAATGTGTTTCTAGCTGTTCTTCCAATGTTCCATGTGTATGGTCTTTCGCTTTTCGCTTTGGGGTTACTGTCTTTGGGTTCTACTGTCATTGTAATGAGGAAATTTGACATTGATGAGGTTTTCAATGCAATTGACAAGTATAAGGTTACACATTTCCCTGTTGTTCCGCCGATGATGACAGCATTGACAAAGAGAGCAAAGGGTGTTAATGGAAGTCATTTGCAGAGTTTGATACAAGTCTCCAGTGGTGCAGCACCTTTGAATGAAAGTGTTATTCAAGACTTTGTGCAAACATTCCCTCATGTTGATTTTATACAGGGTTATGGAATGACCGAATCGACTGCAGTAGGAACACGCGGCTTCAATACTGAAAAATTGCACAATTATTCGTCAGTAGGATTGTTAGCTCCAAACATGGAGGCAAGAGTTGTAGACTGGAGTAGCGACGCATTCTTGCCTCCGGGAAGCAGTGGTGAGCTTTGGTTGAGAGGACCTGCAATCATGAAAGATTGCCCCTGCTGA 1269 0.4208 MAANVNCDMPHNRISTTLITYPHWYSPKNGIYRSKHPALDLPKDPFFDLVSFVFSHRHNGVSALVDSSTGSSISYSKLQPLVKSMAYGLHKMGVSQGDVVLLLLPNSIYYPIVFMSVLCLGAVVAPLNPLSTISEIQKQIKDCGVSFAFTVPENFKKLEPLGIPIVAVPENEEGLKLDCFSCFSNMMISGEFGFYMRPVIQQDDTAAILYSSGTTGVSKGVVLTHKNLISMVELFVRFEASQYEYSCLNNVFLAVLPMFHVYGLSLFALGLLSLGSTVIVMRKFDIDEVFNAIDKYKVTHFPVVPPMMTALTKRAKGVNGSHLQSLIQVSSGAAPLNESVIQDFVQTFPHVDFIQGYGMTESTAVGTRGFNTEKLHNYSSVGLLAPNMEARVVDWSSDAFLPPGSSGELWLRGPAIMKDCPC 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181246g00025 422 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 26 418 - -
Stsc181246g00025 422 ProSitePatterns Putative AMP-binding domain signature. 208 219 IPR020845 -
Stsc181246g00025 422 Gene3D - 29 420 IPR042099 -
Stsc181246g00025 422 Pfam AMP-binding enzyme 57 418 IPR000873 -
Stsc181246g00025 422 SUPERFAMILY Acetyl-CoA synthetase-like 56 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181246g00025 Stsc-Chr181246 120929 123069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181246g00025 10 418 Monolignol Biosynthesis Gene Families AT4G19010 59.466 4.99e-179 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181246g00025 K01904 - gmx:100804808 637.876