Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181246g00006 ATGAGCGTTCCTCCACATCACCCTCCTCCCCCGACGATGACGTGGCAGTCGGCGCCGTTCACCGTGGCGCAGTGGCAGGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACCTCAAAGCAGGACTCACCGTTCCACCGGACCTCCTCGTACCTATTCGGAGGAGCCTCCAGTTGATGTCTCAGAAGCTCTCTCATCACTACCCATCTCTGGGGTTTTATGGGAAGAAGATAGATCCGGAGCCAGGGAGGTGCAGGAGGACCGATGGCAAGAAATGGAGGTGCTCTAGGGAAGCACACCCTGACTCTAAGTACTGCGACCGCCACATGATACGGCGTCGTTACCGTTCAAGAAAGCCTGTGGAATCATCAACTTCATCTCAACAACAATCTCACTCTTCTGCTGCTGTTGCTACTACTACTGCTGCAGCTGCTTCTGCTGCTAGTGATGGTGGTGGTGGTGGTGGTGGTGCTTCTGCTTCTGGTGGAACCTTCCACACACTCCCTTTGCACACCAATGGAACCCGTGAAGGCTTCACCCTTGGGAGCAGCAATAGTAACAGCTTGCAAAACTTGCACATGGACCACCCTTTGTCACTTCCCGGTGAGGTTAACAAGAAGGAGTACAGGTTTGCACTGAACTCCGATGTAGACGAGCACAACTTCTTGCAGAAAGATCTGGGAACTGTGAGGTATCAAGGTTATGACTTCACCTCGGATGGCATGTGGTCCATGCCTCATATCCCCTCAAACACCGTTTCAGAATCAAGAACCAGCTCTACCATGGTTGGCGACTGCTTCCAACAGCAAACAATTCGCGGTGCTGATCTTTTAAACCTGAATGCTGCAGGGTCTAAGGAGATTGTCTTTGGCAGCCAGTTGAGTCCGTCCGGGTGTTTGAAACAGGATTATCAGACCTCTCAGTCTCTCTTCACTGACTGGCACTGGAAGAAGGATTTAGGCTCTGACGCCATTTATCGGCCCCACAAAGATTTCAACTCAGATGCAAATGTTGATTGCAATGGTTCTTTATAA 1032 0.5136 MSVPPHHPPPPTMTWQSAPFTVAQWQELEHQALIFKYLKAGLTVPPDLLVPIRRSLQLMSQKLSHHYPSLGFYGKKIDPEPGRCRRTDGKKWRCSREAHPDSKYCDRHMIRRRYRSRKPVESSTSSQQQSHSSAAVATTTAAAASAASDGGGGGGGASASGGTFHTLPLHTNGTREGFTLGSSNSNSLQNLHMDHPLSLPGEVNKKEYRFALNSDVDEHNFLQKDLGTVRYQGYDFTSDGMWSMPHIPSNTVSESRTSSTMVGDCFQQQTIRGADLLNLNAAGSKEIVFGSQLSPSGCLKQDYQTSQSLFTDWHWKKDLGSDAIYRPHKDFNSDANVDCNGSL 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181246g00006 343 Pfam QLQ 19 53 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc181246g00006 343 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Stsc181246g00006 343 MobiDBLite consensus disorder prediction 120 145 - -
Stsc181246g00006 343 PANTHER GROWTH-REGULATING FACTOR 5 13 202 IPR031137 GO:0005634|GO:0006351|GO:0032502
Stsc181246g00006 343 SMART QLQ_2 18 54 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc181246g00006 343 Pfam WRC 79 121 IPR014977 -
Stsc181246g00006 343 MobiDBLite consensus disorder prediction 108 199 - -
Stsc181246g00006 343 ProSiteProfiles QLQ domain profile. 19 54 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc181246g00006 343 MobiDBLite consensus disorder prediction 164 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181246g00006 Stsc-Chr181246 33601 36700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181246g00006 19 196 GRF Transcription Factor Family AT3G13960 43.316 3.45e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Stsc181246g00006 WRC 1.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181246g00006 - - ahf:112747495 582.793