Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181246g00003 ATGTTTACATGCATAGCTTGTACGAAGCAAACGGCGGAAGAGAGGGAAGAAGAAGGCCGTGAGAGTGGCACGCCGAGTACAAAAGAAGCCGTCAAAAGCCTGACCACGCAGTTAAAGGACATGGCACTGAAGTTTTCAGGTGCATATAAACAGTGCAAACCATGCACAGGTTCAAGTACCTACAAGAAAGGACAGAGACCTTATCCTGATTTTGACACCATCTCAGAAGGGGTTCCATACCCTTATATGGGAGGTGCAAGCACAAGTTCAACCCCTGCTTGGGACTTCACTAGCTCCAATCATCCTGGTAGAACTGACCCAAGATTCATTAGAGGATTTGGTGGGGACCAGACCCCTAGAGCTCGCGATTCGGCCTCGGTTTGTGATGTGGTGTTGGAGGATGAAGGTGAAGCCAAGGAGTGGATGGCACAAGTGGAGCCAGGGGTTCACATCACCTTTGTTTCTCTTCCTAATGGTGGAAATGACCTCAAAAGAATTCGCTTCAGAATCATGGAACTCTACAACGTTCAGCGATTCAATCGACAATCTCTTAACACTCCTCCAAGATCCGAGGACGAGCCAAGGGATTCTACATACTCAAGATTGACATCGGCGCGAGAGAGCCCCATGGCCTCATCGTTAAACAGGGATTGGACAACACCAAGGCATCACTATAAACACTTGGATCAAGGTGGTTCCGGCCACCAGTTCCATGGAGCAGGGTCATCCATGGATGCATCAAGGACTACAACCTCTTCTAGAGATGAGCCTTCGGTCAGTAATGCGAGCGAGATGGAGACAGAATGGGTAGAGCAGGATGAGCCTGGAGTCTACATCACAATCAGGCAGTTAGCCGATGGAACGAGGGAGCTTCGACGTGTGAGATTCAGCCGGGAAAGATTTGGGGAGGTAAATGCAAAGACATGGTGGGAAGAGAACAGGGATAGAATACAAGCTCAATACCTTTGA 969 0.4902 MFTCIACTKQTAEEREEEGRESGTPSTKEAVKSLTTQLKDMALKFSGAYKQCKPCTGSSTYKKGQRPYPDFDTISEGVPYPYMGGASTSSTPAWDFTSSNHPGRTDPRFIRGFGGDQTPRARDSASVCDVVLEDEGEAKEWMAQVEPGVHITFVSLPNGGNDLKRIRFRIMELYNVQRFNRQSLNTPPRSEDEPRDSTYSRLTSARESPMASSLNRDWTTPRHHYKHLDQGGSGHQFHGAGSSMDASRTTTSSRDEPSVSNASEMETEWVEQDEPGVYITIRQLADGTRELRRVRFSRERFGEVNAKTWWEENRDRIQAQYL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181246g00003 322 ProSiteProfiles BRX domain profile. 267 322 IPR013591 -
Stsc181246g00003 322 MobiDBLite consensus disorder prediction 201 218 - -
Stsc181246g00003 322 Pfam Transcription factor regulating root and shoot growth via Pin3 266 321 IPR013591 -
Stsc181246g00003 322 Pfam Transcription factor regulating root and shoot growth via Pin3 139 169 IPR013591 -
Stsc181246g00003 322 MobiDBLite consensus disorder prediction 11 25 - -
Stsc181246g00003 322 MobiDBLite consensus disorder prediction 11 30 - -
Stsc181246g00003 322 MobiDBLite consensus disorder prediction 181 269 - -
Stsc181246g00003 322 MobiDBLite consensus disorder prediction 236 266 - -
Stsc181246g00003 322 Pfam Transcription factor BRX N-terminal domain 22 55 IPR027988 -
Stsc181246g00003 322 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 322 IPR044532 -
Stsc181246g00003 322 ProSiteProfiles BRX domain profile. 139 207 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181246g00003 Stsc-Chr181246 12992 18823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181246g00003 1 322 Major Intrinsic Protein MIP AT1G31880 63.408 1.66e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181246g00003 - - ccaj:109789470 519.62