Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181245g00025 ATGATTCAAACAACAACAAGCCATGGTTTTGCTTACAAAATCAGCATAGTTTGCACCATTTTGATGGTAGCTCTTCATGCAGCATTTCTATCTTTCACCATTCTCAATCATGAGACTCAATGCACATCAAAATTCAAGGCTTCTGCATCAGAGACAATTCAAATTCTATCATGGGGTGTGAGCCTAATTGCAATTTGCAAGGCATCAAGAACAAGTTCTTTCTTTCCATGGATTCTTAGAGCTAGGTGGATTTGTAGCTTCATTTTGTGCATTGTTGGAACATCACTTCACACAGTTTTCAGTGTTAGCCAAAAGGGTCAAATTGGTTTAGCAGAATATGCAGATTTCACTGGTTTGGTTACTTCAACATTCTTATTGGTTGTATCAATCAGAGGGAAGAATGACATTGTGTTAGTTCAAAAAAGTGAGGTAACTGAACCACTTCTAAGTGAGAAGAAACCTGGGAAAACTTCAGAATTTGTAAAGGAATCTCCATATGGAAAGGCTACTTTGATTCAACTCATCAACTTCTCTTGGCTCAATCCATTGTTTGAAGTTGGTTACAAGAAGCCTCTTGAGCAAAGTGACATTCCCAATGTCGATATCAAGGACTCGGCCGAGTTTCTAAACTCGGCCTTCGAAGAGAGCCTTAGGAAGGTAAAGGAGAAAGATGGGACTACAAACCCCTCAGTTTACAAGGCAATCTATTACTTCACCAGGAAGAAAGCTGCAATCAATGCGCTTTTCGCCGTGATATGCGCTTCGGCTTCATATGTTGGTCCTTACTTGATCACTGACTTTGTTGATTTCTTGGGGGAGAAGCAAAAGCAAGGATTGAAGACAGGGTACCTTCTTTCACTAGCATTCTTATGTGCTAAAATGGTTGAGACAATAACTCAGAGGCAATGGATTTTCGGCGCGAGGCAATTAGGCCTTCGCCTTAGATCTGCATTGATATCTCATATATACAAGAAGGGTCTGCATCTTTCGAATAGATCGCGACAAAGTCACACGGGTGGCGAGATAATGAACTATATGAGTGTTGATGTGCAGAGAATCACTGATTTTGTTTGGTATGTTAATGTGATTTGGATGCTTCCCATACAAGTTTCCTTAGCAGTGTTCATCTTGCATACAAATCTCGGATTAGGCTCTATGGCCGCGCTAGCCGCTACTCTAGCAGTGATGACTCTGAACATACCTCTTACCAAGATACAGAAAAGATACCAAGCAAAGATCATGGCTGCCAAAGATGATAGAATGAAAGCAACTTCAGAAGTTCTGAGAAACATGAAGACTTTGAAGCTTCAAGCATGGGATAGTGAGTTTCTTAAAAGGCTTGAATCATTGAGGATGGTGGAGTATGGCTGGTTACTGAAGTCATTACAACAAGCAGCACTTTCAGCCTTTATCTTTTGGGGATCACCTACATTCATTTCTGTGATAACCTTTTGGGCTTGTATGCTAATGGGAATCGAGCTAACGGCCGGACGAGTTTTATCCGCATTCGCCACCTTTAGAATGCTACAGGATCCCATTTTCAGCCTACCTGATTTGCTCAATGTCATGGCTCAAGGGAAAGTTTCGGTTGATCGGATCGCTTCATACCTTAGGGAGGAAGAAATCCAGCATGATGTCATTGAAAATGTAGCAAGGGACAAAACAGAATTTGATGTAGCTATTTGTGGAACGGTTGGTTCGGGTAAATCGAGTCTGCTGTCTGGCATTTTAGGAGAGATATACAAGCAATCTGGCATGGTGAAGATCAGTGGAAGCAAAGCTTATGTTCCACAGTCTCCATGGATACTTACAGGGAATATCAGAGACAATATCACATTTGGAAGAGAGTATGATCCTGAAAAGTATGAGAAGACTATAGAAGCTTGTGCATTGAAGAAGGACTTTGAGCTATTCTCTTGTGGTGATCTCACTGAGATTGGAGAAAGAGGGATCAACATGAGTGGTGGACAAAAGCAAAGGATTCAGATAGCGCGAGCCGTTTACCAAGATGCTGATATATATCTTCTAGATGACCCTTTTAGCGCCGTCGATGCACATACTGGAACACACCTATTTAAGGAGTGCCTTATGGGGATTCTTAAAGAGAAGACTATACTTTTTGTAACACACCAAGTTGAATTTCTTCCAGCAGCAGATCTCATCCTGGTGATGCAAAATGGGAAAATTACACAAGCTGGGAAATTTGAAGAGCTTCTACAGCAAAACATAGGATTTGAAGTCTTGGTTGGTGCTCATAGTAAAGCTCTCGAGTCGATTCTCACGGTCGAAAACTCGAGCAGAACAGCTCAAAATCCCATAGCTGAGGCAGAATCAAACTCAAATGCAAAACTCATGAACACAGAACAGCATGACACAGTTGAAGATAATCCACCTGCAGAGAGCAAAAAGGGGAATGAAGGAAAATTGGTGCAAGATGAAGAAAGAGAGACAGGAAGCATATCAAGGGAAGTATACTGGTCTTATCTTACAACTGTGAAAGGAGGAGCATTGGTTCCAGTTATAATCTTAGCACAATCTTCATTCCAAGTACTTCAGATTGCAAGTAACTATTGGATGGCTTGGGTTTGTCCTACAAGTAGTGATGCTAAGCCTATATTTGAGATGAACTTCATACTGCTTATTTACATGGTGCTTTCTGTGGCCGGCGCGCTATGCGTGCTGGTTCGAGCCATGTTGGTCGCATACACTGGCCTTTGGACAGCACAGACATTTTTCACAGGCATGCTGCATAGTGTGCTTAGAGCTCCAATGTCATTCTTTGATTCAACACCAACTGGAAGAATCTTGAACAGGGTCTCTACAGATCAAAGTGTTCTAGACTTGGAGATGGCAACAAAATTAGGATGGTGTGCTTTCTCTGTGATCCAAATGCTGGGAACTATTGCAGTGATGTCTCAGGTGGCATGGCAAGTGTTTGCCATTTTCATTCCAGTAACTGCAGTTTGCATATGGTATCAAAGATATTATACACCAACAGCAAGAGAATTGGCTCGCTTAGCACAGATACAAATTGCACCAATCCTCCACCATTTCGCAGAATCTTTAGCCGGAGCAGCATCGATACGAGCTTTCGATCAAGAAGGCCGATTCGTAGACACAAATCTTGATCTTGTGGATGGCCATGCAAGGCCATGGTTTCATAATGTGTCTGCAATGGAATGGCTTTCTTTCAGATTGAACATTCTTTCAAATTTTGTTTTTGCATTCTCACTTGTTATGCTTGTGACCCTCCCTGAAGGAATAATCAATCCAAGCATTGCAGGGTTGGCAGTAACATATGGAATCAATCTGAATGTGTTGCAAGCTCAAGTTATATGGAATATATGCAATGCTGAAAACAAGATGATATCAGTTGAAAGAATTCTGCAATACAGAAATGTAGCAAGTGAGGCGCCGCTTGTCATCGAGGACAGCAGGCCGCCGAGCAACTGGCCGGAGACCGGAACAATATCCTTCACAAATTTACAGATACGCTATGCTGAACAACTCCCATCAGTTCTTAAAAACATCACATGCACGTTCCCCGGACGGAAGAAAATCGGCGTTGTAGGACGAACCGGAAGTGGAAAATCGACCCTTATACAGGCGATTTTTAGGATTGTTGAGCCAAGAGAAGGAAGCATTGTAATAGACAATGTGGACATATGCAAGATAGGACTTCATGACTTAAGGTCAAGGCTCAGCATCATCCCACAAGACCCTTCCATGTTTGAAGGCACTGTTAGGGGCAATTTAGACCCCCTCGAACTATACTCTGACACTCAAATCTGGGAGGCACTAGATAAATGTCAACTTGGTCAGCTAGTGAGGGAAAAGCAAGAGAAGTTGGACAGCCAAGTTGTAGAAAATGGTGAGAACTGGAGTGTAGGACAAAGGCAACTATTTTGCCTTGGAAGAGCATTGCTGAAGAGAAGTAGCATATTAGTTCTTGATGAAGCAACTGCCTCTGTGGACTCTGCAACTGATGGTGTGATACAGAAGATCATCAGTCACGAGTTTAAAGATCGAACCGTCGTCACAATTGCTCACCGGATTCACACGGTTATCGACAGCGATCTTGTTTTGGTGCTCAGTGAAGGGAGAATTGCTGAGTATGATGAGCCATCAAAGTTACTTGAAAGAGAAGATTCCTTCTTCTATAAACTGATAAAGGAGTATTCTAGCAGATCAAGTGGTTTCAGCAGCTTGGCTTCTCACCATGTTCAAAGCTAA 4233 0.4222 MIQTTTSHGFAYKISIVCTILMVALHAAFLSFTILNHETQCTSKFKASASETIQILSWGVSLIAICKASRTSSFFPWILRARWICSFILCIVGTSLHTVFSVSQKGQIGLAEYADFTGLVTSTFLLVVSIRGKNDIVLVQKSEVTEPLLSEKKPGKTSEFVKESPYGKATLIQLINFSWLNPLFEVGYKKPLEQSDIPNVDIKDSAEFLNSAFEESLRKVKEKDGTTNPSVYKAIYYFTRKKAAINALFAVICASASYVGPYLITDFVDFLGEKQKQGLKTGYLLSLAFLCAKMVETITQRQWIFGARQLGLRLRSALISHIYKKGLHLSNRSRQSHTGGEIMNYMSVDVQRITDFVWYVNVIWMLPIQVSLAVFILHTNLGLGSMAALAATLAVMTLNIPLTKIQKRYQAKIMAAKDDRMKATSEVLRNMKTLKLQAWDSEFLKRLESLRMVEYGWLLKSLQQAALSAFIFWGSPTFISVITFWACMLMGIELTAGRVLSAFATFRMLQDPIFSLPDLLNVMAQGKVSVDRIASYLREEEIQHDVIENVARDKTEFDVAICGTVGSGKSSLLSGILGEIYKQSGMVKISGSKAYVPQSPWILTGNIRDNITFGREYDPEKYEKTIEACALKKDFELFSCGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSAVDAHTGTHLFKECLMGILKEKTILFVTHQVEFLPAADLILVMQNGKITQAGKFEELLQQNIGFEVLVGAHSKALESILTVENSSRTAQNPIAEAESNSNAKLMNTEQHDTVEDNPPAESKKGNEGKLVQDEERETGSISREVYWSYLTTVKGGALVPVIILAQSSFQVLQIASNYWMAWVCPTSSDAKPIFEMNFILLIYMVLSVAGALCVLVRAMLVAYTGLWTAQTFFTGMLHSVLRAPMSFFDSTPTGRILNRVSTDQSVLDLEMATKLGWCAFSVIQMLGTIAVMSQVAWQVFAIFIPVTAVCIWYQRYYTPTARELARLAQIQIAPILHHFAESLAGAASIRAFDQEGRFVDTNLDLVDGHARPWFHNVSAMEWLSFRLNILSNFVFAFSLVMLVTLPEGIINPSIAGLAVTYGINLNVLQAQVIWNICNAENKMISVERILQYRNVASEAPLVIEDSRPPSNWPETGTISFTNLQIRYAEQLPSVLKNITCTFPGRKKIGVVGRTGSGKSTLIQAIFRIVEPREGSIVIDNVDICKIGLHDLRSRLSIIPQDPSMFEGTVRGNLDPLELYSDTQIWEALDKCQLGQLVREKQEKLDSQVVENGENWSVGQRQLFCLGRALLKRSSILVLDEATASVDSATDGVIQKIISHEFKDRTVVTIAHRIHTVIDSDLVLVLSEGRIAEYDEPSKLLEREDSFFYKLIKEYSSRSSGFSSLASHHVQS 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181245g00025 1410 Pfam ABC transporter 1174 1322 IPR003439 GO:0005524
Stsc181245g00025 1410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1148 1389 IPR027417 -
Stsc181245g00025 1410 FunFam ABC transporter C family member 3 1140 1392 - -
Stsc181245g00025 1410 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 244 525 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc181245g00025 1410 Pfam ABC transporter 559 680 IPR003439 GO:0005524
Stsc181245g00025 1410 CDD ABC_6TM_ABCC_D1 245 533 IPR044746 GO:0140359
Stsc181245g00025 1410 Gene3D ABC transporter type 1, transmembrane domain 214 543 IPR036640 GO:0005524|GO:0016020
Stsc181245g00025 1410 Gene3D ABC transporter type 1, transmembrane domain 800 1137 IPR036640 GO:0005524|GO:0016020
Stsc181245g00025 1410 CDD ABC_6TM_ABCC_D2 838 1131 IPR044726 GO:0140359
Stsc181245g00025 1410 MobiDBLite consensus disorder prediction 789 815 - -
Stsc181245g00025 1410 FunFam ABC transporter C family member 5 522 760 - -
Stsc181245g00025 1410 Gene3D - 1140 1393 IPR027417 -
Stsc181245g00025 1410 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 168 1394 - -
Stsc181245g00025 1410 FunFam ABC transporter C family member 5 801 1138 - -
Stsc181245g00025 1410 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 528 751 IPR003439 GO:0005524
Stsc181245g00025 1410 SUPERFAMILY ABC transporter transmembrane region 240 541 IPR036640 GO:0005524|GO:0016020
Stsc181245g00025 1410 SUPERFAMILY ABC transporter transmembrane region 839 1137 IPR036640 GO:0005524|GO:0016020
Stsc181245g00025 1410 CDD ABCC_MRP_domain2 1155 1375 - -
Stsc181245g00025 1410 ProSitePatterns ABC transporters family signature. 653 667 IPR017871 GO:0005524|GO:0016887
Stsc181245g00025 1410 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 840 1120 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc181245g00025 1410 Gene3D - 545 770 IPR027417 -
Stsc181245g00025 1410 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1157 1391 IPR003439 GO:0005524
Stsc181245g00025 1410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 559 744 IPR027417 -
Stsc181245g00025 1410 Pfam ABC transporter transmembrane region 245 508 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc181245g00025 1410 Pfam ABC transporter transmembrane region 849 1084 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc181245g00025 1410 CDD ABCC_MRP_domain1 559 728 - -
Stsc181245g00025 1410 FunFam ABC transporter C family member 10 227 541 - -
Stsc181245g00025 1410 SMART AAA_5 1183 1375 IPR003593 GO:0016887
Stsc181245g00025 1410 SMART AAA_5 555 728 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181245g00025 Stsc-Chr181245 289113 295764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181245g00025 559 781 Calmodulin-binding Proteins AT2G36910 30.579 1.01e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181245g00025 - - gmx:100817486 2302.32