Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181245g00013 ATGGTGGAGATCGACAAGGTGGTGGTCGACGCGATGGCGGTGCCGGTGAAGAGAGGAAGAAAGAAAAGAGATAGAGAACATAGAGTGAGGTCCCGAAATGATAGAGAGAATGAAGGAAGTGATCTACAGCGTCGGTGGAATGAACGAAACACTTTCTCTATTTTCGCTGATAACTTACCGGCGGATGCGTCTCTTGGCTGGCTATGGAAGGTGTTTAGCAGTGTGGGAGAAGTAGTTGATGTATATTTATCGAGAAAACGGAGAACGAATAACCCGTTACGGTTCGCCTTCATCAGGTACAAGTCTAGAAATGAAGCGTTGCGTGCTATTGAACAATATGATGGGTGGATCGTATGGGGGTGTGAAATCAAGCTCACAGAGTCGCGATACAAAAGAAACATTAAGGACCATACTGAAAAGAAGCAGGAGGGAGCCAAGGGGAGCGCGAATACTGACGGTAACGTGGAGAATGACGGGATGATGAAACAGGGGAAATCGTATAAGGATGTCGTCTTGGCTGGGTCCAATGCTGGAAACTCTGAAAAGGTGAACATACCAAACGACATGCAAACTCTAGGTGAATCAAAGATCCTATTGTCTAGGAATGGTGAATTATTACAAAAGATGAAGAGAGGTTTAGTTGGAGAGACCATGAGTCCGATCGAGTTCAATACGCTGAAGAATGCAGTGTTGGAGGATTGGGCAAATATACAAGAAGTCAGTATGATTGGTCCAATGAAGATGCTATTAGTCTTTGATTCTGAGGAGCACATGATGGAAGCATGTGAATCGCCGAACATGCTGAACCACTTCATAGACGTTCGCCCATGGTCTAAAGGGGAAACTAACAGGCTTAGGAGGTGCTGGATTGAGGTAGTTGGCTTGCCTGTACATGGATGGTTGGTGGATAATATGTGTAAGATTGGGGAGGTGTGGGGAAGAGTGATTGAGGTGGTAGGAGGAAGCGAGAATCAATTCTCATCATTTAAGGTGCTTATTGATGTTGGTGTAGGTCCAATGATACAAGCCTTTGCTGATGTGTTGATTGAAGAAGAAACCTTCCGAATCTTCGTGAGAGAGGTGGATATCTGCCATGCCTGTTTGAAAGACAAGGATGCGGTTAACTGCTATACCCTGGATGCGAATAGGGAGGAAGACAGGATACGTGAGAATGCCATGTCTAATATGATGAGGCAGAATGATGCCGTGGTGGTGGTGGAAACCATGGCGGAGGAAACCGAAAAGTCAAGGGTGGGGGAAACCGAAACGGTACAGGAAGTTGGAGAGGATGGGATTGAGAAAATGAGCTCCCATAAGTGTCCTGAAAGCCCAGTGATTGATGAGTGTGGACCTTTGGCACCGGGTCAGGAGGATAGCCGAATTGGGGCAAATGGGGAGTGCCCAATTAATGGCGCTAGCCAAACTCGTACCCGGTCCATTGAAGACGACAGAAGGACAGATGATGTTATAAGAGAAAAAATAAACGCTATTGGGCTTGTAGTTGGGAATAAGGATGGGGAGTCAGGCCATGAGGAAGAAGTTGATATGGTGGCCCAAACACAACTTGGACTAAATGCTGACCCAACTAATGATCCCAATTGGTCTTCTATTCCTCCTGGTTTTGAAGGCTTTGAGAATGAGAGAGACACACTGCAAGACGGTGAGAGTGACACACAACAAAACGGCGAGGGAGTTAGGGTTATTGCTATCCAAGGAGGCAACGATAATGGGAAAAGCAATCGCCCAAGAAGGAAGTGCTGCCCGAAACTAAAAGGAATCCTCGTAGAGAAAGCAAGAAGACCCCCAAAGAAGTTTAGCTTGAAGGAAGATGAAATCGAGGATGATGATGATGTAATCGATTGGATTTGGGAGGCGGGTTATGGAGCTGGTTTAGTTGCGGAGGACATCTTCATAACGAAGAAGTTCTTGGAGGATAGAGCGACTGAACTGGGTGTTAAAACGGCTAGTAGACAGAGCCATAGAAGAGAAGAGAAAACGTGGAATTACTGCGAGTCAACAGTGAACGGAAACATGTCTGGGATGAAATTGTTGAAGTCAAAGAGCGTTGCAATCTTCCAGTCATTGCCTTTCGGAGATTTCAATGAAGTGTTGCACGCTGGAGAAAGAAGCAGTGGAAGAATAAACAATGTGGGGGTCCAGGATTTCAAACAGTGGATGATGGATATGGAAGTGGAAGATAAATTTCTGGGGCTACAAACCAAAGCTATCAAGTGCTCTAAATCGGATCATATTCCGATTATCCTATGTCGCGATGAGGAAGATTTGGGCCCTAAACCGTTTAGGTCCCTCGATGTTTGGCTGTCGCACCATCAATTCAAAGCTATGTTCAAGAAAGAGTGGAGACAAACTCAAGGTAGGAATGTTGCAGAGAAACTAAAACCTTGA 2406 0.4564 MVEIDKVVVDAMAVPVKRGRKKRDREHRVRSRNDRENEGSDLQRRWNERNTFSIFADNLPADASLGWLWKVFSSVGEVVDVYLSRKRRTNNPLRFAFIRYKSRNEALRAIEQYDGWIVWGCEIKLTESRYKRNIKDHTEKKQEGAKGSANTDGNVENDGMMKQGKSYKDVVLAGSNAGNSEKVNIPNDMQTLGESKILLSRNGELLQKMKRGLVGETMSPIEFNTLKNAVLEDWANIQEVSMIGPMKMLLVFDSEEHMMEACESPNMLNHFIDVRPWSKGETNRLRRCWIEVVGLPVHGWLVDNMCKIGEVWGRVIEVVGGSENQFSSFKVLIDVGVGPMIQAFADVLIEEETFRIFVREVDICHACLKDKDAVNCYTLDANREEDRIRENAMSNMMRQNDAVVVVETMAEETEKSRVGETETVQEVGEDGIEKMSSHKCPESPVIDECGPLAPGQEDSRIGANGECPINGASQTRTRSIEDDRRTDDVIREKINAIGLVVGNKDGESGHEEEVDMVAQTQLGLNADPTNDPNWSSIPPGFEGFENERDTLQDGESDTQQNGEGVRVIAIQGGNDNGKSNRPRRKCCPKLKGILVEKARRPPKKFSLKEDEIEDDDDVIDWIWEAGYGAGLVAEDIFITKKFLEDRATELGVKTASRQSHRREEKTWNYCESTVNGNMSGMKLLKSKSVAIFQSLPFGDFNEVLHAGERSSGRINNVGVQDFKQWMMDMEVEDKFLGLQTKAIKCSKSDHIPIILCRDEEDLGPKPFRSLDVWLSHHQFKAMFKKEWRQTQGRNVAEKLKP 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181245g00013 801 MobiDBLite consensus disorder prediction 460 483 - -
Stsc181245g00013 801 Pfam Domain of unknown function (DUF4283) 208 323 IPR025558 -
Stsc181245g00013 801 MobiDBLite consensus disorder prediction 18 42 - -
Stsc181245g00013 801 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 124 IPR000504 GO:0003723
Stsc181245g00013 801 Gene3D - 12 144 IPR012677 -
Stsc181245g00013 801 MobiDBLite consensus disorder prediction 138 160 - -
Stsc181245g00013 801 SMART rrm1_1 53 126 IPR000504 GO:0003723
Stsc181245g00013 801 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 43 171 - -
Stsc181245g00013 801 SUPERFAMILY RNA-binding domain, RBD 45 133 IPR035979 GO:0003676
Stsc181245g00013 801 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 130 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181245g00013 Stsc-Chr181245 165184 168670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181245g00013 29 116 Eukaryotic Initiation Factors Gene Family AT3G11400 32.955 5.67e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181245g00013 K12891 - ahf:112794598 121.709