LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181245g00008	ATGTGCTACGTCGTTTTGATCACCCGCTTTTGCCNNNNNNNNNNCTTCGCTATGGATTTCTGCCACGGTGGTAACCTCCATTCTCTCAGGAAGAAACAAACTGAGAAAATGTTCTCCGATGACACCATCAGGTTTTACGCGGTGGAATTGGTCCTAGCTTTGGAGTACTTGCATGGTTTGGGAATAGTGTACAGAGACTTAAAGCCAGAAAACGTCATGATCCAAGAAAACGGTCACGTAATGCTCGTTGATTTCGATCTTTCCAAGAACCTCAAGCCAAAATCTCCACAATCAGCGAGTCACAACTCGTCGCCGAGTCCTAACTCGAACTCGGCGGCGAAGAAACCCGCAAGGAAGCGCCGGTTATCGTGGTTTAACATAAACTGTAACTCTGGCATCTTACCGTTCGAGTTGGACTCAGTAGAACCTCCTCCCGAGTCAACTCGTCGGGGTGAGTCAGACTCGGTGGAGAAATCGAACTCGTTCGTTGGAACGGAAGAGTACGTGGCACCTGAGGTTGTAGGAGGGCACGGTCACGGTTTCGGCGTTGATTGGTGGTCACTCGGCGTCGTTTTGTATGAAATGTTATACGGAACGACGCCGTTTAAGGGTGAGAATAGAAAAGAAACGTTTATTCGGATATTAACGAAGGAGCCGGAGTTGACGGGGGAGAAGACGGCGTTACGGGATCTGATTGGCAGGTTGTTAGAGAAGGATCCTGACCGTCGGATCACAGTTGGCGAGATCAAGAGTCATGATTTCTTTAAGGGAGTTAAGTGGGACACGGTGTTGCAAATAGCGAGACCACCTTATATTCCTTGCAATGAGGTTGATGACGCAGTGGGGCTTAGCAAAAAGGAAGTGGAGATTTTTGTTCATGGAGTGTTTTTTCCGGAGGGAAATGATGATGGAGGAGAGAAAAATAATAACAAAGTGGAGGAAAAAAAGAATGGTGGAAATGGGGAGAATAATAGTAACAAAGTGTGGTCTGACAAGTTGAGTCATAAACCCACTGAGAATGATGATTTTTTAATTTTTTGA	1041	0.4592	MCYVVLITRFCXXXXFAMDFCHGGNLHSLRKKQTEKMFSDDTIRFYAVELVLALEYLHGLGIVYRDLKPENVMIQENGHVMLVDFDLSKNLKPKSPQSASHNSSPSPNSNSAAKKPARKRRLSWFNINCNSGILPFELDSVEPPPESTRRGESDSVEKSNSFVGTEEYVAPEVVGGHGHGFGVDWWSLGVVLYEMLYGTTPFKGENRKETFIRILTKEPELTGEKTALRDLIGRLLEKDPDRRITVGEIKSHDFFKGVKWDTVLQIARPPYIPCNEVDDAVGLSKKEVEIFVHGVFFPEGNDDGGEKNNNKVEEKKNGGNGENNSNKVWSDKLSHKPTENDDFLIF	346

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc181245g00008	346	MobiDBLite	consensus disorder prediction	91	115	-	-
	Stsc181245g00008	346	FunFam	Serine/threonine-protein kinase OXI1	157	274	-	-
	Stsc181245g00008	346	Gene3D	Transferase(Phosphotransferase) domain 1	21	94	-	-
	Stsc181245g00008	346	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	62	74	IPR008271	GO:0004672\|GO:0006468
	Stsc181245g00008	346	MobiDBLite	consensus disorder prediction	301	341	-	-
	Stsc181245g00008	346	Pfam	Protein kinase domain	157	255	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181245g00008	346	Pfam	Protein kinase domain	16	96	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181245g00008	346	SMART	serkin_6	3	255	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181245g00008	346	MobiDBLite	consensus disorder prediction	91	113	-	-
	Stsc181245g00008	346	MobiDBLite	consensus disorder prediction	304	320	-	-
	Stsc181245g00008	346	FunFam	Serine/threonine-protein kinase OXI1	25	93	-	-
	Stsc181245g00008	346	ProSiteProfiles	Protein kinase domain profile.	1	255	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181245g00008	346	MobiDBLite	consensus disorder prediction	138	161	-	-
	Stsc181245g00008	346	SUPERFAMILY	Protein kinase-like (PK-like)	15	276	IPR011009	-
	Stsc181245g00008	346	Gene3D	Transferase(Phosphotransferase) domain 1	156	274	-	-
	Stsc181245g00008	346	PANTHER	FLIPPASE KINASE 1-RELATED	15	279	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181245g00008	Stsc-Chr181245	106350	108952	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc181245g00008	16	296	AGC Kinase Gene Family	AT4G13000	62.989	3.95e-115	337

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Stsc181245g00008		Pkinase	6.5e-23	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc181245g00008	K20714		-	gmx:100785773	441.039