Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181245g00007 ATGGGGCCAAATGGTGGTGCCTTGTCAGCGGCAGCCAAGCAAGCCGAGCAACTCAGAATACACGGCAACGCTTACTTCAAGAAAGACCGTTTCGGTGCCGCCATCGATGCCTACACTGAGGCAATTACTTTGTGCCCTAATGTTCCTGTGTATTGGACGAACCGTGCTCTCTGCCATCTTAAGCGCAATAATTGGGAGAGAGTGGAGGAAGATTGTCGGAGAGCAATTCAGCTTGACAACCATTCGGTCAAGGCCCACTACATGTTGGGGCTTGCATTGCTACAGAAACAAGAACATACCAAGGGGATCAGAGAATTAGAGAAGGCTTTGGATCTTGGGAGAGGCACCAATCCCAAGGGCTATATGGTAGAAGAAATATGGAGAGAGCTTGCAAAAGCAAAATACCAAGAGTGGGAACGGACATCTTCCAAGCGATCGTGGGAATTGCAGAGCTTGAAGGAAGCTTGCGAGTCTGCTCTAAAGGAAAAACACTCTCTTGATATGAACCACATGGAAGGATTTGTAGATGATTGTACCATTTCTCAATTGGAACAATTAGAGGCTTTAGAAAGAGTCTTCAGTAAAGCTGCAGAGGGTGACACTCCTACTGAGGTGCCAGATTACCTATGCTGCAGAATCACACTTGATATTTTTCATGATCCGGTAATCACTCCGAGTGGAAATACATATGAGAGGGCAGTGATTCTCGACCATTTGCAGAAGGTTGGTAGGTTTGACCCTGTGACGCGAGAACCACTGGATCCATCGCAACTAGTACCGAACTTGGCTATTAAGGAAGCAGTGCAGGCATACTTGGACACACATGGGTGGGCCTACAAGGTTTAA 846 0.4716 MGPNGGALSAAAKQAEQLRIHGNAYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHLKRNNWERVEEDCRRAIQLDNHSVKAHYMLGLALLQKQEHTKGIRELEKALDLGRGTNPKGYMVEEIWRELAKAKYQEWERTSSKRSWELQSLKEACESALKEKHSLDMNHMEGFVDDCTISQLEQLEALERVFSKAAEGDTPTEVPDYLCCRITLDIFHDPVITPSGNTYERAVILDHLQKVGRFDPVTREPLDPSQLVPNLAIKEAVQAYLDTHGWAYKV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181245g00007 281 SMART Ubox_2 208 271 IPR003613 GO:0004842|GO:0016567
Stsc181245g00007 281 Coils Coil 149 169 - -
Stsc181245g00007 281 Pfam Tetratricopeptide repeat 84 112 IPR019734 GO:0005515
Stsc181245g00007 281 Pfam Tetratricopeptide repeat 22 47 IPR019734 GO:0005515
Stsc181245g00007 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 281 IPR013083 -
Stsc181245g00007 281 SUPERFAMILY RING/U-box 203 279 - -
Stsc181245g00007 281 Gene3D Tetratricopeptide repeat domain 9 145 IPR011990 GO:0005515
Stsc181245g00007 281 CDD RING-Ubox_CHIP 205 275 IPR045202 -
Stsc181245g00007 281 Pfam U-box domain 205 277 IPR003613 GO:0004842|GO:0016567
Stsc181245g00007 281 SMART tpr_5 83 116 IPR019734 GO:0005515
Stsc181245g00007 281 SMART tpr_5 15 48 IPR019734 GO:0005515
Stsc181245g00007 281 SMART tpr_5 49 82 IPR019734 GO:0005515
Stsc181245g00007 281 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Stsc181245g00007 281 SUPERFAMILY TPR-like 7 134 IPR011990 GO:0005515
Stsc181245g00007 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 280 IPR045200 GO:0000209|GO:0061630
Stsc181245g00007 281 ProSiteProfiles U-box domain profile. 204 278 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181245g00007 Stsc-Chr181245 95806 99527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181245g00007 11 281 U-box Gene Family AT3G07370 69.004 1.96e-142 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181245g00007 K09561 - gmx:100796519 493.812