Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181245g00006 ATGCTTCGGTTGTTTTCATCTGGGTCTTATCTTTTCGAGTCATTTTCAAACCCCCCATTTATAAAAGCATTGCAAGCTTTGACGCACGCCACCTATTCGACCATTTGTCTAGCTCAACCTAAAGCTGAAAAGGATGAGCCTGCAGAGAAACCAAATAATGCTACTGGGGTTTTGAGTAAATGGGGTTGTAGTAATGTTGATTTGATGAGAATATATGCCCGTTGCCCTGCTTTGCGCAATGCTGATGCTTCCAAAATCCAATCAAAACTTGATCTTCTCAGTGCCATGGGAATAGGTACATCTGATCTTGTCAAGATAGTCAATTGCAGGCCCCGGTTTTTCCAGTCTCGGATTAACCACTCTTTCAATGAGAGGATTGCTTATCTCTTGTCATTGTTTGAGACAAAGGATTTGCTTAACAAGGCCATTGTGAGAAACCCTTCACTTTTGATCTGTGATGATAGACATAACATTGAAGCTGTTTTTTCACTCTATGAGGAGTTGGGTGTTAACAAAAGGGACTTGATTCAGATGATCCTGCTTCGTCCCACCATCATTTCAAGGACTTCGTTCAACGATGAAAAGATGGAATACATTCGCAGGATAGGGCTTTCCAGGGATTCAAAGATGCATAAGTATGTGGTAACTCTAATCGGTGTGTCACGTGTCGAAACAATTTCTGAGAAGGTTGCGAATTTGCAGAAATTTGGTTTGTCTGAAGATGAGGTCTTTTGCCTTTTAGGCAAGTCCCCTCATATTTTGACATTGTCAACTAACAAGGTTCAGAGGAACATGACTTTCATTCTGGCAACAATGAAGCTTGATGCCAAGGCAATCCTAAAATGCCCTTTTCTCTTGTGTGTTAATATGGATACGGTTTTGAAGCCAAGGGTGCTTCTGGTAATGAAGGTACTTGAGATTGACGGCGAGCAGCAAATCAAGAGACCGCCGATTCTTAGGGCACTCAGGATGACAGAGGAGAAGTTTGTGAATTCGTTTATCAAATGCCATGAAAAGGAAGTTGCCAAGGAGTTAATGGAATTCTATAGAGGAACAAAAAAGTTGAGCTGCAAAGCTTTGAACAGCATTTGA 1092 0.4139 MLRLFSSGSYLFESFSNPPFIKALQALTHATYSTICLAQPKAEKDEPAEKPNNATGVLSKWGCSNVDLMRIYARCPALRNADASKIQSKLDLLSAMGIGTSDLVKIVNCRPRFFQSRINHSFNERIAYLLSLFETKDLLNKAIVRNPSLLICDDRHNIEAVFSLYEELGVNKRDLIQMILLRPTIISRTSFNDEKMEYIRRIGLSRDSKMHKYVVTLIGVSRVETISEKVANLQKFGLSEDEVFCLLGKSPHILTLSTNKVQRNMTFILATMKLDAKAILKCPFLLCVNMDTVLKPRVLLVMKVLEIDGEQQIKRPPILRALRMTEEKFVNSFIKCHEKEVAKELMEFYRGTKKLSCKALNSI 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181245g00006 363 PANTHER CGI-12 PROTEIN-RELATED 10 339 IPR003690 GO:0003690|GO:0006355
Stsc181245g00006 363 SMART mt_12 140 171 IPR003690 GO:0003690|GO:0006355
Stsc181245g00006 363 SMART mt_12 176 205 IPR003690 GO:0003690|GO:0006355
Stsc181245g00006 363 SMART mt_12 244 275 IPR003690 GO:0003690|GO:0006355
Stsc181245g00006 363 SMART mt_12 104 135 IPR003690 GO:0003690|GO:0006355
Stsc181245g00006 363 SMART mt_12 208 239 IPR003690 GO:0003690|GO:0006355
Stsc181245g00006 363 SMART mt_12 69 99 IPR003690 GO:0003690|GO:0006355
Stsc181245g00006 363 SMART mt_12 276 308 IPR003690 GO:0003690|GO:0006355
Stsc181245g00006 363 FunFam Mitochondrial transcription termination factor family protein 122 343 - -
Stsc181245g00006 363 Gene3D Transcription termination factor 3, mitochondrial 115 343 IPR038538 -
Stsc181245g00006 363 Pfam mTERF 142 329 IPR003690 GO:0003690|GO:0006355
Stsc181245g00006 363 Pfam mTERF 57 180 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181245g00006 Stsc-Chr181245 91454 93234 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc181245g00006 mTERF 1.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181245g00006 K15031 - gmx:100799629 429.869