Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181244g00034 ATGGCCTCAACAGGTAATGATGGTAATAATGGAGAGAAAGAAGAGCTTGGTTTCAGTTCATCATCAATTACAATTACTACTAATGAGACGAAGGGGAAGAATGATTGGGTCCTTTTGTCACTGAGGGTGGTTTCATTTTTGGCCACTGCTTCTGCCACAATTGTGATGGCACTCAATAAACAGACCAAAAATTTAGTAGTTGCTACGCTTGGTAACACTCCTATAACCGCCACTATTACGGCAAAGTTTAACCAAACTCCTGCTTTTGTGTTCTTTATTATAGCCAATGGAAACGCTAGTCTGCATAACTTGGTGATGATAGCAGTGGATTTATTAGTACCACGATATGATTACAAGGGACTCCGTCTTGCATTAATTGCAATATTAGATATGATGGCTATGGGTTTGGCATCAGCTGGAGATGGTGCAGCGACATTCATGTCCATGTTGGGAAGGAATGGAAATTCTCATGCACAATGGAATAAGATTTGTGACAAATTCGAAAGCTACTGTGACAGAGAGGGTGCTGCTCTTATAGCCTCTTTCATTGGCTTCATCCTCCTCTTCATAATCACAGTCATGTCCATCATCAAGCTCCTCAAGCCAAATCGCATTAACCATTTCAACGCTTCAAGACCTGATTCAACGGGTGTTGGTGGCTCTTCTAACCCATCCCCCCAAACCCCAATACATTCTAGTTCAAATTCTGAATTTGCCAATACTTGTGGATTAGATGTAATCGATCTCAATAATGATGAAGTTGAAGAAATTCCACAAGAGAACGTCCACTATTGGACATGGAAGGAGGATGAGATACACATTGGTGCGTGGTTGAATGTGTCAACCGATCATGTAGTTGGAACCGACCAAAAGGGTGATACATTTTGGAATCGGATTCACAACTACTGCGAAGGATACAACCCGACGATGAAAAGGGGAGTCGCTACTCGCAACATAAAGAATGGTTCAAACAGCGATGACATAAAGGAGTTTGCCGGAGGATCCAAAAGAACAAAGATCACCTCAGCTGGAGCATACTCATCGTCATCAAACCCAGAGACACTGTTGGCTGAAGATGCTGGTATTGACTCACCTGTGCACCCGCAAGGATCGAAGAAGAGCAAGAGAAGGGGAAAGGGAAAGGGAAAAGCACAAATGTCTGAAGATCTTAGCGATACAAAATCATCCATTGTTAAGAAACTTTCTCTGATAGAGGATTTCAAGATTGCTAGGGAGAAGGAAGTATTAGATGAGAGGGAAAACATAGATATTCTTGTTGCAATAAAGGAAAAGGAGTTACAGATTCAACAAGAGATGAAGCAACATGAATTACAAACTCAGAAGCTTATTAAAGAAATGGAGATACATGCAAAGGAAAGAGAAATGAATTTTCAAGTCCTTAATGCTGACCCCGCTAAGATGAGTGAGAGTAGACGTGCTCTTCATGAGCAAGCATGTGCGAAGATTTATGCAAAGTGGTTTACTTAG 1488 0.414 MASTGNDGNNGEKEELGFSSSSITITTNETKGKNDWVLLSLRVVSFLATASATIVMALNKQTKNLVVATLGNTPITATITAKFNQTPAFVFFIIANGNASLHNLVMIAVDLLVPRYDYKGLRLALIAILDMMAMGLASAGDGAATFMSMLGRNGNSHAQWNKICDKFESYCDREGAALIASFIGFILLFIITVMSIIKLLKPNRINHFNASRPDSTGVGGSSNPSPQTPIHSSSNSEFANTCGLDVIDLNNDEVEEIPQENVHYWTWKEDEIHIGAWLNVSTDHVVGTDQKGDTFWNRIHNYCEGYNPTMKRGVATRNIKNGSNSDDIKEFAGGSKRTKITSAGAYSSSSNPETLLAEDAGIDSPVHPQGSKKSKRRGKGKGKAQMSEDLSDTKSSIVKKLSLIEDFKIAREKEVLDERENIDILVAIKEKELQIQQEMKQHELQTQKLIKEMEIHAKEREMNFQVLNADPAKMSESRRALHEQACAKIYAKWFT 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181244g00034 495 MobiDBLite consensus disorder prediction 358 391 - -
Stsc181244g00034 495 MobiDBLite consensus disorder prediction 211 237 - -
Stsc181244g00034 495 Coils Coil 425 459 - -
Stsc181244g00034 495 NCBIfam plant integral membrane protein TIGR01569 39 199 IPR006459 -
Stsc181244g00034 495 Pfam Casparian strip membrane protein domain 33 187 IPR006702 -
Stsc181244g00034 495 PANTHER - 217 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181244g00034 Stsc-Chr181244 314037 319526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181244g00034 218 481 Glutathione S-transferase Gene Family AT5G41240 22.941 9.61e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181244g00034 - - aip:107630541 343.584