Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181244g00026 ATGGAACAGCTGATATTGGCTTCAGAATCTGACATCAAAGAGGTCTCTCCTTTGAGGCCAAAGCCAAAAAATAATGATGCACCGGAGCCTCCTGGAAGTCCTAGAAGTAGAAAGGTCTCTGCTAGATGGGATCCAGCTGAGGCATGCCGACCCATGATTGATGAAGCACCTGTGTTCTATCCTACTATTGAGGAATTTGAAGACACACTTGGCTACATAGCAAAGATACGGCCCCAAGCTGAACCCCATGGAATATGCAGGATTGTCCCTCCTGCTTGCTGGGTGCCACCTTGCCCTCTGAAGGAGAAAGAAATATGGGAAAATTCTAAATTTTCCACCCGTATCCAGCAGATTGATTTGCTTCAAAATAGGGAGCCAATGAAAAAGAAAAAAAGGGGAAGGAAACGGAAACGTAGAAATCACTCCAAAATGGGCACCTGCAGGAGACTCCCCAATTCAAGTTCGGGAGCTAATAATGCTTCTGAACCTGATGAGAAATTTGGATTCCAATCAGGGTCAGACTTCACATTTAAAGACTTTCAGCAGTATGCTAATTATTTTAAGGAATGCTACTTTCGGTTGAAAGATCCTGATGAAGATGAAAAGTTTAGCAATAATAGATGGGAGCCCTCGGTGGAGGTAATTGAAGGTGAATATTGGCGAATAATTGAGCAACCAACTGATGAGGTCGAGGTGTATTATGGTGCAGACTTGGAAACTGGATCTGTCGGAAGTGGTTCTGTACTTAGTTTTGAAGGAAGTGACATCTCAGGAGTTCTTGTGCCATGGCTATATGTTGGCATGTGCTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTTTATTCTCTTAATTACCTGCACTGGGGCGACCCAAAAGTATGGTATGGGGTACCTGGAAGCCACGCTTCAGCATTGGAAAATGCAATGAGGAAGCACTTACCTGATTTATTTGAGGAACAGCCAAATCTACTCAATGATCTGGTTACTCAGTTATCTCCTTCGATTCTTAAATCTGAGGGTGTGCCTGTATATCGTACTGTCCAGCATTCCGGGGAGTTTGTTATTACTTTTCCAAGGGCATACCACTCTGGCTTCAATTGCGGCTTCAACTGTGCAGAGGCAGTGAATGTGGCTCCTGTTGATTGGCTAATGCATGGCCAGAATGCTGTTGAGCTTTATAGTTTGCAGGGCCGTAAGACATCCTTGTCGCATGACAAGCTGTTATTTGGATCAGCACAGGAAGCTATACTGGCCCTCGCAGAACTAGCTCTTCATGGAAAAGAAACTCCAAAATGCTTGAAATGGAGAAGTGTCTGTGGGAAAGAGGGAGTTCTAACAAAGGCCATTAAGACAAGGATACAGATGGAAGAAGAGAGGCTGGGATGTCTTCCAACACATTTAAAGTTGCTAAAGATGGACAGAGACTTCGATTCTTATGATGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACATATCTGCTGTGGGATGTGAGTGCTCTAGGGACAAATATTCTTGTCTTAAGCACTCAAAGTTGTTATGCTCTTGTGCAATGGAGAAAAGATTTGTTCTTTTTCGTTATACGACAGATGAACTAAAATCTTTGGTTGAAGCATTAGAAGGAGAGTCACGTGCTATTGAGGTGTGGGTAAATAAAAGGCTTGGAATATCTACTGTTGCCAATGAGGTTTGCATGTATGAAGCAGATGCGGAGAAAGACATGTATGAAGCGAAGAATCACAAAGAGGAGGAGACCTCAAGAATAGAAACCATGAATAACACAAATTTAAATACACCTAGCAGGCCTCATAGTCATGTTACTTCAGTGATAGTTCTGTCGGAGTCTTACGATGTAACTTCTGGTGCATCATATGGCATCATAGAAAATCATAATCATAGTATTGATAAGAAGTTGGCCGCAGATAATGGACATAAAGTGGATCAGGCAGATTCTTTGGATTTGAATCTTGAAGCTATATCTGATGGAAATGAAAATAATTTGCTGCTTGAGGGTTCCTCAATAGAGGAAAAATCATGTTGCTCAGACTCTGGAAAGAAACAAGAAAACATAGGGCTTGTAGGCGAGAATAACCTATCACACTTGTGTGTTCTTCCGACAGAACTTTCATCGTGTTCAAGGGATGTTCACTATTCTGGTCCATCTAATGGTGGGAAATTTGGGATAGATTCAAATTCTGGAAGGCAGCCTAACAGCTTGGTTAAAAGGGAAATCATCGACACCGTGAATAGAAGTATATCTTCAAGTGATGAAAGCTATCTAATGCAAGTGTTTGGTATTACTGTGAAGCTTATAAGTTTGGGATCTGTATCTTATGGAAAGCTGTGGTGCACTAAGCAAGCAATATATCCAAGAGGATTCAAGAGTCAAGTTAGCTTCTTTAGCGTTCTTGATCCAGCAAGAATATGTAGCTATACTTCTGAAGTTGTTGATGCTGGATTTCTTGGACCTCTATTCAAGGTTACCATGGAAGATCATCCAAATGAGGTTTTCACCAATACTACCCCAGACAAGTGCTGGGAATCAATTCTAAAGAGACTAGTTGATGAAATCATAAGGCGAAGGAATCTAGGTGAACTAGAACTTCCTCCCGTGGAGCTTTTGAAAAGCATCAATGGTCATAGAATGTTTGGCTTCCATTTGCCATCTGTTATTCAGGCCATTGAAGCTCAAGATCTCACTCAGCAGTTTGCTGACTACTGGAACCACAGATGTGTCCTCACATCATTGGATGGTGCGAATAAAAAGTCCAAAGATGGTTCAGGTAGCTCTTCAGGTAATGGCAATACCAAAGTTTTTGGCATCAATTTAATTAAGCAGGAAGATGATGACACAAGTGGAAGTTGTCATTCCCTTGGAGAGAAGCAATCAATATTACAGGGATTGCTAAAAAGGGCAAGTTCTGATGAGTTAAGCGCGATGCATAAGTTATTCAGCTCGGACACGTTGTGTTCGCAGTGGAGAGTGACATTCTTAGCCCTAATGGAGGAGATCAATAAAGCTGGTAGATAA 3039 0.4182 MEQLILASESDIKEVSPLRPKPKNNDAPEPPGSPRSRKVSARWDPAEACRPMIDEAPVFYPTIEEFEDTLGYIAKIRPQAEPHGICRIVPPACWVPPCPLKEKEIWENSKFSTRIQQIDLLQNREPMKKKKRGRKRKRRNHSKMGTCRRLPNSSSGANNASEPDEKFGFQSGSDFTFKDFQQYANYFKECYFRLKDPDEDEKFSNNRWEPSVEVIEGEYWRIIEQPTDEVEVYYGADLETGSVGSGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASALENAMRKHLPDLFEEQPNLLNDLVTQLSPSILKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPVDWLMHGQNAVELYSLQGRKTSLSHDKLLFGSAQEAILALAELALHGKETPKCLKWRSVCGKEGVLTKAIKTRIQMEEERLGCLPTHLKLLKMDRDFDSYDERECFSCFYDLHISAVGCECSRDKYSCLKHSKLLCSCAMEKRFVLFRYTTDELKSLVEALEGESRAIEVWVNKRLGISTVANEVCMYEADAEKDMYEAKNHKEEETSRIETMNNTNLNTPSRPHSHVTSVIVLSESYDVTSGASYGIIENHNHSIDKKLAADNGHKVDQADSLDLNLEAISDGNENNLLLEGSSIEEKSCCSDSGKKQENIGLVGENNLSHLCVLPTELSSCSRDVHYSGPSNGGKFGIDSNSGRQPNSLVKREIIDTVNRSISSSDESYLMQVFGITVKLISLGSVSYGKLWCTKQAIYPRGFKSQVSFFSVLDPARICSYTSEVVDAGFLGPLFKVTMEDHPNEVFTNTTPDKCWESILKRLVDEIIRRRNLGELELPPVELLKSINGHRMFGFHLPSVIQAIEAQDLTQQFADYWNHRCVLTSLDGANKKSKDGSGSSSGNGNTKVFGINLIKQEDDDTSGSCHSLGEKQSILQGLLKRASSDELSAMHKLFSSDTLCSQWRVTFLALMEEINKAGR 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181244g00026 1012 PANTHER LYSINE-SPECIFIC DEMETHYLASE 50 721 - -
Stsc181244g00026 1012 MobiDBLite consensus disorder prediction 146 165 - -
Stsc181244g00026 1012 SUPERFAMILY Clavaminate synthase-like 170 415 - -
Stsc181244g00026 1012 SMART cupin_9 232 396 IPR003347 -
Stsc181244g00026 1012 Gene3D Cupin 51 244 - -
Stsc181244g00026 1012 Pfam F/Y rich C-terminus 825 912 IPR003889 GO:0005634
Stsc181244g00026 1012 SMART JmjN_1 55 96 IPR003349 -
Stsc181244g00026 1012 SMART fyrc_3 827 916 IPR003889 GO:0005634
Stsc181244g00026 1012 SMART fyrn_3 777 821 IPR003888 GO:0005634
Stsc181244g00026 1012 ProSiteProfiles FYR domain FYRN motif profile. 763 821 IPR003888 GO:0005634
Stsc181244g00026 1012 ProSiteProfiles JmjC domain profile. 227 396 IPR003347 -
Stsc181244g00026 1012 MobiDBLite consensus disorder prediction 124 165 - -
Stsc181244g00026 1012 Pfam C5HC2 zinc finger 486 538 IPR004198 -
Stsc181244g00026 1012 MobiDBLite consensus disorder prediction 127 145 - -
Stsc181244g00026 1012 MobiDBLite consensus disorder prediction 1 43 - -
Stsc181244g00026 1012 Gene3D Cupin 245 402 - -
Stsc181244g00026 1012 Pfam JmjC domain, hydroxylase 263 379 IPR003347 -
Stsc181244g00026 1012 Pfam jmjN domain 57 90 IPR003349 -
Stsc181244g00026 1012 Gene3D - 764 905 - -
Stsc181244g00026 1012 ProSiteProfiles FYR domain FYRC motif profile. 823 913 IPR003889 GO:0005634
Stsc181244g00026 1012 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Stsc181244g00026 1012 Pfam F/Y-rich N-terminus 771 818 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181244g00026 Stsc-Chr181244 281382 288150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181244g00026 749 947 JUMONJI Transcription Factor Family AT1G30810 41.089 4.70e-42 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc181244g00026 JmjC 8.4e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181244g00026 K11446 - gmx:100801775 1368.6