Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc180g00004 ATGGCATCAGGTAGATATTACTGGTGGTACATAAATGTGGTTCCATTCTGTGCAATGGTGACAGTTGAATGCTTCAGTGTTGTTACTAGCGTTCTATTCAAAGCAGCCACTGAGAAAGGGTTGAGTTACTATGTTTTCATTGCTTATTCATATGCCATCTCCACCTTTATTCTTCTTCTCCCTTTGCCCTTCATCTTTACCAGGTCAAGCGGATTGCCCACATTTAAAGCCTCTTTGCTCGGTAGGACTTTTCTTCTTGGAGTGCTTGGGTTTATATTTCAGCTTATTGCATATAAAGGACTTGAGTTTAGTTCACCCACTCTCGCTTCAGCTCTCAGTAATCTCATTCCAGCTTTTACTTATGTACTCGCAATTTTATTCAGGATGGAAAAAGCAACATTGAAGAGCTCAAGCACTCAGGCCAAAATAATAGGTTCAGTTGTATCAATCATTGGTGCACTTGTAGTAACACTCTACAAAGGCCCAACAGTGTTACCTGCTTCATCCACTTTGTCTCCACCACTGAGCTCATCATCATCATCACAAGGAGATTGGGTTCTTGGAGGCTTCTTACTTGCTGCTTCATATACTTTACCTCCACTTTGGTATATTGTACAGACGCAAGTTATGGAACAATATCCGGTAGAACTTGTTGTGGTGTTTCTATACAACTTGTGTGGGACTCTTATATCTGTGCCAGCAGCATGCTTGCTTCTTGAATCAAGCTTCAGCTTTTGGAGGCTGAAACCTGACATAACATTAGTGGCGGTTATATTCTCAGGATTTTGTGGGACCTTGGTGAGTGTGGTTCATACATGGGGAGTACATCTTAAAGGCCCTGTGTATGTATCAGCTTTCAAGCCACTATCTGTTGTCATAGCTGCTGCAATGAGTGTCGTGTTCCTTGGTGATGCTTTGTTTCTTGGAAGTGTTATTGGAGCAGGGATACTATCAATTGGGTTTCATGCTGTTTTATGGGGAAAAGCAAAATCAACAGCAGAATTGAGTGAAGAGTATTGCTTGAATAGAAAGCTTTCTACATGCAACAGCACAACTCCTTTATTGCGTAGTAAACAAAGAAAGCAGAGTTATCCTATATAA 1101 0.4105 MASGRYYWWYINVVPFCAMVTVECFSVVTSVLFKAATEKGLSYYVFIAYSYAISTFILLLPLPFIFTRSSGLPTFKASLLGRTFLLGVLGFIFQLIAYKGLEFSSPTLASALSNLIPAFTYVLAILFRMEKATLKSSSTQAKIIGSVVSIIGALVVTLYKGPTVLPASSTLSPPLSSSSSSQGDWVLGGFLLAASYTLPPLWYIVQTQVMEQYPVELVVVFLYNLCGTLISVPAACLLLESSFSFWRLKPDITLVAVIFSGFCGTLVSVVHTWGVHLKGPVYVSAFKPLSVVIAAAMSVVFLGDALFLGSVIGAGILSIGFHAVLWGKAKSTAELSEEYCLNRKLSTCNSTTPLLRSKQRKQSYPI 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc180g00004 366 Pfam EamA-like transporter family 18 157 IPR000620 GO:0016020
Stsc180g00004 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 160 - -
Stsc180g00004 366 PANTHER WAT1-RELATED PROTEIN 14 332 IPR030184 GO:0016020|GO:0022857
Stsc180g00004 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 232 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc180g00004 Stsc-Chr180 35139 44843 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc180g00004 8 331 Nodulin-like Gene Family AT5G40240 57.313 6.83e-122 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc180g00004 - - aip:107605316 485.723