Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc17g00042 ATGGCTGCTAAGCGCAGAAGCTTGAAGCGCAAACTCGAACATGATTTGGTTGCACTTGAATCGGAGGGCACCAAGTCTCCACGTCTGCCTCAAACCTCTCCTCCTTCTTCTCGTGACTTCTCTGCAACCATTCTTTCACACGTAGATCTACTCAATTCCCCTTGCTCCGGTTATGTGGCTGATCGTGCTGCACTCTGTAGATCTCTCCATGCTCTCTCAGATTTGGCCCAGAACGAGGAAATTGTTGATGATATCGTCAAGTGCGGCGTTATACCCGCTGTGGTGAAGCATCTGGAGGTGCCGATTGATGATGACTGTGCCTGCGGACCGTATCGTTTTGAAGTAGAGAAAAAGTGTGCAATGATTCTTGGGCTTCTTGCTATAAAGCCAGAGCATCAAAACCTGATTGTTGATTCTGGAGCGTTGCCTTATATTGTGGATTTGTTAAAGAGGCACAAAACGAGTAGCATTTCTCCCAGTTGTATTGGTCTTCTTAGGAGAGTAGCTGATGCAATAACTAGCCTTGCACATGAAAATACCACCATAAAAAACCTTGTCAGGACTGAAGGTGGAATCCCTCCACTTGTGGAATTGCTTGAATTCAATGATATAAATGTACAGAAGGCTGCTGGAGCTGCTTTGCGAACTCTCGCCTTCAAGAATGATGACAATAAGAATCAGATTGTTGAATGCAATGCATTACCAACTCTTGTGCTAATGCTACGATCAGAGGATCCTACTGTACATTATGAGGCGGTTGGTGTGATAGGAAACCTTGTACACTCTTCGCCCAATATTAAGAAAGAAGTTCTTGAAGCTGGGGCATTACAACCTGTTCATATTGCTCAAAGAGGGGCTATTCAACCATTAGTTGGCATGCTTAAGTCATCAGATTCACAGCTTAAGCAGATGTCAGCTTTTGCTCTTGGGAGGTTGGCACAGGATTCACACAATCAAGCTGGTATTGCTTATCATGGAGGTATTGAGCCTCTAATTGATCTTCTTGGCTCAAAGATTGCGTTCATCCAGCACAATGCAGCTTTTGCTCTATATGGCCTGGTGGATAATATGGACAATATTGCAGACGTTATTAAGGCCGGTGGTTTTCAAAAACTTCAGGATGGAAGTTTCATAGCTCAAGCAACTAGAGAGTGTGTAGCAAAAACCTTAACAAGATTAGAGGAGAAGACTCAGGGGAGAGTATTGAAGCACTTGTTATATCTTATGCGCTTTGCAGAAAAGGCTATTCAACGGCGTGTAGCTCTTGCTCTTGCTCATTTATGTCCTATTGATGATTGTAGAACTATTTTTATCGACAACAATGGATTAGAATTGCTGTTGGAACTTCTTGGATCTTCAAATCTTAAACAGGCAGGTGTTGCTTCTCTGGCACTTCACAAGTTGGCTACCAGAGCCATTTCCGTCCCTCTTGTTGATGTTGCACCTTCATCGCCAACTCACCAGGAGTGCTTAGGCAAGCATGATGTTAACAATCCAAAACTCTCTGATGTCACATTCTTGGTTGAAGGCAAAAGATTCTATGCTCATCGAGTTTGTTTAGTCAAGTCAGATATATTTCGAGCAATGTTTGATGGTGGTTACAGGGAAAGGGAAGCCAAAGATATAGAGATTCCAAACATCAAATGGGATGTATTTGAATTGATGATGAGATATATATACACTGGAACAGCAGATATTAGTTTAGATATTGCTCAGGATCTCCTCAAAGCTGCCGATCAGTATCTTCTTGAGGGTCTTAAGCGTCTTTGCGAAAGTGCTATTTCCCAGGATATTACTGTGGAAAATGTTGCACTAATGTACCAGATGTCAGAAACTTTCAATGCAACTTCACTAAAACATGCCTGCATAATGTTTGTGTTGGACCAATTTGATAAGCTGAGTTCCAAACCATGGTATGGCTACCTGGTTTGCTGCATTGTTCCATACATACGCAAATTCTTCTCAACTTTACTTGGGAAGCCTAGTTCTGCTGATTCATGA 2001 0.4248 MAAKRRSLKRKLEHDLVALESEGTKSPRLPQTSPPSSRDFSATILSHVDLLNSPCSGYVADRAALCRSLHALSDLAQNEEIVDDIVKCGVIPAVVKHLEVPIDDDCACGPYRFEVEKKCAMILGLLAIKPEHQNLIVDSGALPYIVDLLKRHKTSSISPSCIGLLRRVADAITSLAHENTTIKNLVRTEGGIPPLVELLEFNDINVQKAAGAALRTLAFKNDDNKNQIVECNALPTLVLMLRSEDPTVHYEAVGVIGNLVHSSPNIKKEVLEAGALQPVHIAQRGAIQPLVGMLKSSDSQLKQMSAFALGRLAQDSHNQAGIAYHGGIEPLIDLLGSKIAFIQHNAAFALYGLVDNMDNIADVIKAGGFQKLQDGSFIAQATRECVAKTLTRLEEKTQGRVLKHLLYLMRFAEKAIQRRVALALAHLCPIDDCRTIFIDNNGLELLLELLGSSNLKQAGVASLALHKLATRAISVPLVDVAPSSPTHQECLGKHDVNNPKLSDVTFLVEGKRFYAHRVCLVKSDIFRAMFDGGYREREAKDIEIPNIKWDVFELMMRYIYTGTADISLDIAQDLLKAADQYLLEGLKRLCESAISQDITVENVALMYQMSETFNATSLKHACIMFVLDQFDKLSSKPWYGYLVCCIVPYIRKFFSTLLGKPSSADS 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc17g00042 666 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 232 274 IPR000225 GO:0005515
Stsc17g00042 666 Pfam Armadillo/beta-catenin-like repeat 185 218 IPR000225 GO:0005515
Stsc17g00042 666 Pfam Armadillo/beta-catenin-like repeat 221 260 IPR000225 GO:0005515
Stsc17g00042 666 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 190 225 IPR000225 GO:0005515
Stsc17g00042 666 SMART BTB_4 502 598 IPR000210 GO:0005515
Stsc17g00042 666 SUPERFAMILY ARM repeat 167 471 IPR016024 -
Stsc17g00042 666 Gene3D - 280 375 IPR011989 -
Stsc17g00042 666 Gene3D Potassium Channel Kv1.1; Chain A 482 627 IPR011333 -
Stsc17g00042 666 Gene3D - 379 481 IPR011989 -
Stsc17g00042 666 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 326 368 IPR000225 GO:0005515
Stsc17g00042 666 MobiDBLite consensus disorder prediction 1 21 - -
Stsc17g00042 666 SMART arm_5 274 314 IPR000225 GO:0005515
Stsc17g00042 666 SMART arm_5 129 177 IPR000225 GO:0005515
Stsc17g00042 666 SMART arm_5 179 219 IPR000225 GO:0005515
Stsc17g00042 666 SMART arm_5 315 355 IPR000225 GO:0005515
Stsc17g00042 666 SMART arm_5 221 261 IPR000225 GO:0005515
Stsc17g00042 666 SMART arm_5 430 470 IPR000225 GO:0005515
Stsc17g00042 666 SMART arm_5 78 128 IPR000225 GO:0005515
Stsc17g00042 666 SUPERFAMILY POZ domain 496 595 IPR011333 -
Stsc17g00042 666 MobiDBLite consensus disorder prediction 1 38 - -
Stsc17g00042 666 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 279 662 IPR044282 -
Stsc17g00042 666 SUPERFAMILY ARM repeat 66 168 IPR016024 -
Stsc17g00042 666 Gene3D - 42 167 IPR011989 -
Stsc17g00042 666 Gene3D - 168 279 IPR011989 -
Stsc17g00042 666 ProSiteProfiles BTB domain profile. 502 568 IPR000210 GO:0005515
Stsc17g00042 666 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 285 327 IPR000225 GO:0005515
Stsc17g00042 666 Pfam BTB/POZ domain 497 596 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc17g00042 Stsc-Chr17 242766 247339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc17g00042 137 463 U-box Gene Family AT2G23140 28.107 5.66e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc17g00042 BTB 1.6e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc17g00042 - - oeu:111401990 821.617