Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc17g00030 ATGTCGAAAGATACATCAAGCTCCGATGACGAATCGGTTGTGTTCTTGGGGATTGTGACACCCCAAGATCGTGAACGTATGCATCTCCTCATGTGCCAAAGTGATCAAAATAGTATAACTGGCAACACCAACGGTAATGTTGGAGATCACAACAAGGGAAAAGGTATCCCATCAGGATTCGAATTCAACGGATATTCTACTGAAGAGAGTACCACCACGGAGCCATCTGGTCGAGGAAAAAAGAGGGCTACTGATAATAAGAAGAACTTTCAAGCGGGTGAGTGCAGCAAAAGCCGACGAGAGAGGAAGCCCAGGGGGAGGCCCAGGAAGAACACGAAGACGAATGAGCAAATTTTGGATGAACTGATAAATCTGTTGCTAAAAGCTGGATGGCAAATTGGCCCCGATTATGAAAAAAAGGTAGTAGTGTTCTTGGATCTGAAAGGGAAAGGTTATCATTCCATCTTTTCTGCGTACAAGACTCTGAAAAAGAACTATGAGGGTGGCAAAGGAAAAGGCAGATTTTATTTGCGGAATTTCGAGTTTAAGCCCATGCAGCCTCGTGATATCACTAAGCTTCGTCTCTCATCATCACCGGATGATGACAATTACGATAAGAAGAAGAAGGAACAGAAGAGAATGGAAATCAGGAAAGGGAAAGAAAAAGTTGTTTCTGATTCAGATTCTGGTTTTGGTTCAGATTCTGACGACGATCCAAACGATGACACGTGTCTTTTGTATGCAAATAAGAAAGAAGGCACACTCATTTGTTGTGATGGCTGCCCTTCTTCTTTCCATCTAACTTGCTTGAAATTACGTGAGGTTCCATTTGGTGACTGGTACTGCAGTTATTGCCTGTGCAAATTTTGTGGGTTGTATGGCACAACTTCAAATTGTTATGATCATGCTATGTCACTCACATGTTACTTTTGCGAGCATACATATCATAGATACTGTTCGGAGAAGCATGATAGCACCCAGATCAATCATTCAAATGATTCATTATCCTTTTGTGGTAACATATGCCGAGAGTTGTTTGCGAGAGTTCAAAGGCTTCTTGGGGTGAAACATGAAATTGGAGATGGATTTTCTTGCACTTTTGTTTCTGGATCACTACGTGTTCCTCATACCCAGGTTGCAGAATTGAATGACAAACTGTTTAGTGCACTACAAATAATGCACGATGGGTTCAAACCAGAATTTGATCCTATAACTGGGATAAATTTCATACGCAATGTTATATATAGTTGTGGGGTTCATGAAAACAACATAGCAGAGATGCCACTTATTACAACTCGTCGTATGTATAGGCAACAGGGAATGTGTAGCCGTTTTCTGAAAGCCATTGAATCTGTACTAAGCAGTTTAGATGTTAACTTATTGGTAATACCATCTGTGAAAGAACGCAAGAACACCTGGATTTCAGTGTTTGGGTTTGAGCCCTTTGATTGGGAAACCGGAATTAGAACACAAGAAATGAAACTGTTACTTTGCCCTGACTCTGTTATGCTCAAGAAAAACATACACAGCAGACAAGTTCCTAATGATGTTGAGAGAGACCAACATAATCCTAATTCAAGTGCGAACCCTGTCCCAAATACTGGAGAAGATGAGGGTGGTGTTGAAGAAGATGATGATGGGAAGAAGAAGAAGAAGAAAAAAAGGGAGTCGAAGCCGCTGTATACTCTGGAAATGCTGATGATGATGGGCAAAAACAAATCCGCCAGAAAATGA 1734 0.4123 MSKDTSSSDDESVVFLGIVTPQDRERMHLLMCQSDQNSITGNTNGNVGDHNKGKGIPSGFEFNGYSTEESTTTEPSGRGKKRATDNKKNFQAGECSKSRRERKPRGRPRKNTKTNEQILDELINLLLKAGWQIGPDYEKKVVVFLDLKGKGYHSIFSAYKTLKKNYEGGKGKGRFYLRNFEFKPMQPRDITKLRLSSSPDDDNYDKKKKEQKRMEIRKGKEKVVSDSDSGFGSDSDDDPNDDTCLLYANKKEGTLICCDGCPSSFHLTCLKLREVPFGDWYCSYCLCKFCGLYGTTSNCYDHAMSLTCYFCEHTYHRYCSEKHDSTQINHSNDSLSFCGNICRELFARVQRLLGVKHEIGDGFSCTFVSGSLRVPHTQVAELNDKLFSALQIMHDGFKPEFDPITGINFIRNVIYSCGVHENNIAEMPLITTRRMYRQQGMCSRFLKAIESVLSSLDVNLLVIPSVKERKNTWISVFGFEPFDWETGIRTQEMKLLLCPDSVMLKKNIHSRQVPNDVERDQHNPNSSANPVPNTGEDEGGVEEDDDGKKKKKKKRESKPLYTLEMLMMMGKNKSARK 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc17g00030 577 SUPERFAMILY FYVE/PHD zinc finger 230 291 IPR011011 -
Stsc17g00030 577 PANTHER PHD FINGER PROTEIN 12 419 550 IPR042163 GO:0003714|GO:0045892
Stsc17g00030 577 MobiDBLite consensus disorder prediction 37 115 - -
Stsc17g00030 577 MobiDBLite consensus disorder prediction 74 101 - -
Stsc17g00030 577 MobiDBLite consensus disorder prediction 519 533 - -
Stsc17g00030 577 MobiDBLite consensus disorder prediction 515 577 - -
Stsc17g00030 577 MobiDBLite consensus disorder prediction 194 227 - -
Stsc17g00030 577 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 341 IPR013083 -
Stsc17g00030 577 Pfam PHD-finger 244 287 IPR019787 -
Stsc17g00030 577 SMART PHD_3 289 343 IPR001965 -
Stsc17g00030 577 SMART PHD_3 243 286 IPR001965 -
Stsc17g00030 577 MobiDBLite consensus disorder prediction 191 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc17g00030 Stsc-Chr17 161943 165435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc17g00030 237 536 PHD Transcription Factor Family AT4G14920 35.312 4.15e-59 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc17g00030 - - ahf:112696224 468.388